Limit : this year
all time today this week this month this year
1,000 results • Page 5 of 20
Sort: replies
Rank Views Votes Replies
8
votes
2
replies
786
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 6 months ago by 40k • written 3.7 years ago by 10k
5
votes
2
replies
4.4k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 7 months ago by 40k • written 6.7 years ago by 7.5k
0
votes
2
replies
1.7k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 4 months ago by 40k • written 6.2 years ago by ▴ 750
1
vote
2
replies
1.6k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 3 months ago by 40k • written 3.5 years ago by ★ 3.6k
6
votes
2
replies
1.7k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 7 months ago by 40k • written 10.9 years ago by 11k
4
votes
2
replies
2.9k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 5 months ago by 40k • written 8.0 years ago by ★ 2.2k
1
vote
2
replies
631
views
News: Ensembl reduced functionality, early March
ensembl
updated 3 months ago by 40k • written 3.7 years ago by 23k
1
vote
2
replies
501
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
10 months ago by carlopecoraro2 ★ 2.3k
2
votes
2
replies
1.3k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 4 months ago by 40k • written 5.3 years ago by ★ 5.2k
0
votes
2
replies
1.5k
views
News: Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen SAM alignment sangenix
updated 5 months ago by 40k • written 6.7 years ago by ▴ 750
3
votes
2
replies
2.5k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 6 months ago by 40k • written 8.6 years ago by 103k
6
votes
2
replies
2.5k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 5 months ago by 40k • written 6.8 years ago by 10k
0
votes
2
replies
1.9k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 4 months ago by 40k • written 5.7 years ago by 134k
16
votes
1
reply
4.7k
views
News: Samtools/htslib/bcftools 1-3 released
htslib samtools bcftools
updated 5 months ago by 40k • written 7.8 years ago by 103k
2
votes
1
reply
1.8k
views
News: New NPG journal "Human Genome Variation"
journal SNP variation
updated 6 months ago by 40k • written 8.9 years ago by 157k
6
votes
1
reply
937
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 4 months ago by 40k • written 5.8 years ago by ★ 2.3k
4
votes
1
reply
1.1k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 3 months ago by 40k • written 3.8 years ago by ★ 2.3k
1
vote
1
reply
807
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 3 months ago by 40k • written 3.6 years ago by ▴ 40
0
votes
1
reply
424
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 7 months ago by 40k • written 9 months ago by ★ 2.3k
1
vote
1
reply
2.4k
views
News: R package PopGenome: http://popgenome.weebly.com/
R population-genomics popgenome VCF
updated 6 months ago by 40k • written 8.4 years ago by ▴ 50
2
votes
1
reply
792
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 3 months ago by 40k • written 4.6 years ago by ★ 2.3k
0
votes
1
reply
1.4k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 4 months ago by 40k • written 6.0 years ago by 5.8k
0
votes
1
reply
279
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 7 months ago by 40k • written 7 months ago by ★ 2.3k
5
votes
1
reply
1.3k
views
News: Bioinformatics Contest 2017
Contest
updated 9 months ago by 40k • written 6.7 years ago by 7.1k
10
votes
1
reply
3.0k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 6 months ago by 40k • written 9.7 years ago by 157k
2
votes
1
reply
1.5k
views
News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 4 months ago by 40k • written 6.1 years ago by ▴ 10
6
votes
1
reply
1.8k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 6 months ago by 40k • written 8.7 years ago by 157k
3
votes
1
reply
2.4k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 7 months ago by 40k • written 10.6 years ago by 157k
5
votes
1
reply
1.7k
views
News: Google Joins The Global Alliance For Genomics And Health
genomics
updated 6 months ago by 40k • written 9.6 years ago by 157k
0
votes
1
reply
931
views
News: Help GIAB manually curate benchmark SVs!
giab
updated 4 months ago by 40k • written 5.3 years ago by 157k
6
votes
1
reply
1.9k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 6 months ago by 40k • written 9.7 years ago by 10k
1
vote
1
reply
2.4k
views
News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 8 months ago by 40k • written 8.3 years ago by • 0
3
votes
1
reply
1.4k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 4 months ago by 40k • written 6.5 years ago by 26k
3
votes
1
reply
1.1k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 3 months ago by 40k • written 4.0 years ago by ★ 2.3k
3
votes
1
reply
613
views
News: Ensembl Pre! site retirement - 31st January 2021
Ensembl
updated 7 months ago by 40k • written 3.0 years ago by ★ 2.3k
0
votes
1
reply
2.2k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 9 months ago by 40k • written 18 months ago by ▴ 350
6
votes
1
reply
2.7k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 6 months ago by 40k • written 9.4 years ago by 11k
0
votes
1
reply
1.6k
views
News: Webinar Series: Diving Deep into Next Generation Sequencing (NGS) Data Analysis
NGS sangenix webinar
updated 5 months ago by 40k • written 6.9 years ago by ▴ 750
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 6 months ago by 40k • written 9.6 years ago by 10k
5
votes
1
reply
2.7k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 6 months ago by 40k • written 9.8 years ago by 20k
5
votes
1
reply
1.1k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 7 months ago by 40k • written 2.9 years ago by 21k
6
votes
1
reply
1.8k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 6 months ago by 40k • written 8.3 years ago by ★ 4.2k
0
votes
1
reply
1.3k
views
News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 4 months ago by 40k • written 6.2 years ago by ▴ 70
5
votes
1
reply
1.4k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 4 months ago by 40k • written 5.3 years ago by ★ 2.3k
2
votes
1
reply
1.3k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 4 months ago by 40k • written 6.3 years ago by ▴ 610
3
votes
1
reply
2.1k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 4 months ago by 40k • written 5.9 years ago by 157k
0
votes
1
reply
1.0k
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 7 months ago by 40k • written 2.7 years ago by 10k
1
vote
1
reply
1.7k
views
News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 6 months ago by 40k • written 9.9 years ago by 8.2k
14
votes
1
reply
2.2k
views
News: The Gene Ontology Handbook (open access)
training handbook GO
updated 5 months ago by 40k • written 6.8 years ago by ▴ 740
0
votes
1
reply
571
views
News: International Conference on Renewable & Non-Renewable Energy
next-gen
updated 4 months ago by 40k • written 5.3 years ago by • 0
1,000 results • Page 5 of 20
Recent Votes
Answer: Identifying common DEGs among multiple datasets
Answer: Identifying common DEGs among multiple datasets
A: what do the headers of the rMATS output files mean?
A: what do the headers of the rMATS output files mean?
Answer: DESeq2 analysis using two featureCounts generated from different studies
Answer: DESeq2 analysis using two featureCounts generated from different studies
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
Recent Locations • All
Trento, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
Switzerland, 2 minutes ago
United States, 4 minutes ago
South Korea, 5 minutes ago
Lebanon, 6 minutes ago
South Korea, 8 minutes ago
Recent Awards • All
Popular Question to BioinfoBee • 0
Scholar to Pierre Lindenbaum 157k
Teacher to Michael 53k
Teacher to seidel 11k
Popular Question to jabaron.phd • 0
Commentator to ATpoint 76k
Scholar to GenoMax 134k
Recent Replies
Comment: ATAC-seq troubleshoot - Just Noise by ATpoint 76k
Yes, definitely lots of noise and few peaks for such an experiment. Which celltype is that, and which lab protocol did you use?
Comment: DESeq2 analysis using two featureCounts generated from different studies by abedkurdi10 ▴ 190
What do you mean by gene lists?
Comment: Find potential important genes from bulk-RNA seq experiment by Michael 53k
You can use e.g. the WGCNA package for network analysis. In your case multiple samples this might mean multiple patients or a time series o…
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST by Edoardo • 0
Thank you so much for your responses. @genomax , I've downloaded both of the databases you recommended. I attempted to combine them into …
Answer: Simulate short-read RNA-seq data from long-read RNA-seq data by Mensur Dlakic ★ 24k
I think you could try doing this, but it wouldn't be appropriate. You'd be bringing long-read errors, which I believe are higher than short…
Comment: Salmon index not progressing by camillab. ▴ 130
I opened tow terminals and one was the code to build a decoy-aware transcriptome and the other was building indexes (no decoy)
Comment: Adding a control sample to bulk RNA-seq by Chris ▴ 180
Thank you for the explanation! So just want to confirm one control with replicate is totally useless even can't use as a reference?
Answer: DESeq2 analysis using two featureCounts generated from different studies by swbarnes2 13k
Comparing samples between labs is a bad idea. Better to generate gene lists from one study from one lab, and gene lists from another study…
Comment: Adding a control sample to bulk RNA-seq by swbarnes2 13k
If a sample wasn't prepared along side your treated samples, it is a different batch. If you had treated and controls in each of two diffe…
Comment: kallisto normalized TPM values without bootstraps by ATpoint 76k
You don't need sleuth. Typically these deconvolutions, or most downstream analysis, is done on the gene- rather than the transcript-level w…
Comment: Salmon index not progressing by ATpoint 76k
If the top $CPU column shows some values in the hundreds then it is doing something (actually when it's > 0%). So based on the screenshot i…
Comment: Salmon index not progressing by camillab. ▴ 130
Thank you. Waiting it's not gonna hurt me, when should I stop hoping and give up is the question? do you know is there a way if I can see i…
Comment: Filtering VCF to divide with equal sizes by Ram 40k
A more efficient way would be to make a 2 column CSV file, one column with the count value and the other with the chr:start-end range, then…
Answer: Filtering VCF to divide with equal sizes by avelarbio46 ▴ 30
I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
Comment: Salmon index not progressing by ATpoint 76k
Just wait until it is finished. It's seems to be running. I just checked my logs and on our HPC with four cores such as process for a decoy…
Traffic: 2199 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6