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News: Environmental Metagenomics course
Environmental-Metagenomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
0
replies
411
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 11 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
0
replies
476
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
13 months ago by mia.nahom ▴ 10
1
vote
0
replies
443
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
13 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
371
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
13 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
896
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 13 months ago by 43k • written 13 months ago by ★ 1.2k
0
votes
0
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436
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
13 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
383
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 13 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
562
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
5
votes
3
replies
888
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
0
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1
reply
413
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
383
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
471
views
News: Introduction to GWAS course in June
GWAS R
updated 13 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
730
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
352
views
News: Course - Version Control for Researchers
VersionControl GIT Github
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
497
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
391
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
3
replies
862
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
0
votes
0
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369
views
News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
14 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
582
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
14 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
414
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
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376
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
2
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1.0k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
0
votes
0
replies
460
views
News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 10 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
1.2k
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
15 months ago by PeterC_NCBI ▴ 410
1
vote
2
replies
666
views
News: Course: Network Analysis in R
NetworkAnalyis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
468
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
15 months ago by mia.nahom ▴ 10
0
votes
0
replies
612
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
0
replies
678
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
547
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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931
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
465
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
436
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 15 months ago by 43k • written 15 months ago by • 0
0
votes
0
replies
735
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
15 months ago by David Langenberger 11k
1
vote
5
replies
1.1k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
444
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
650
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
2
replies
1.7k
views
News: New chat server (Discord) for bioinformatics
community
15 months ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
641
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
3
replies
906
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
587
views
News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
502
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
15 months ago by mia.nahom ▴ 10
0
votes
0
replies
519
views
News: Introduction to R Shiny course
WebApplications R RShiny
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
566
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
16 months ago by PeterC_NCBI ▴ 410
0
votes
1
reply
539
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 14 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
367
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 16 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
489
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
votes
0
replies
411
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
votes
3
replies
1.0k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
2
votes
3
replies
696
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
1,000 results • Page 5 of 20
Recent Votes
Comment: Trying to write bwa mem -> samtools view -> samtools sort loop
C: Extract fasta sequences from a file using a list in another file.
A: Extract fasta sequences from a file using a list in another file.
How to comparing two bacterial genomes and find the mutation, rearrangement etc.
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
Answer: Korean reference file
How to get all genes for a specific list of regions in R preferably using Biomart
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Comment: Questions about a bug when transferring cram file to bam file by jkbonfield ★ 1.2k
That SQ M5 is chr1 in my copy of GRCh38 (Homo_sapiens.GRCh38_full_analysis_set_plus_decoy_hla.fa). I'm assuming your hg38.fa is not the sa…
Comment: What happened to Tombo Re-squiggle by Ram 43k
Please do not add answers unless you're answering the top level question. Instead, use `Add Comment` or `Add Reply` as appropriate. I've mo…
Comment: What happened to Tombo Re-squiggle by Joseph • 0
Hi, Does anybody has the answer to this? I also want to resquiggle my data with Remora but do not quite get which is the appropriate com…
Answer: change gene IDs to gene name in RNAseq by Trivas ★ 1.7k
This has been answered a million times on this forum, see here https://www.biostars.org/p/430015/
Comment: How To Identify The 16S Rrna Gene Sequence In A Genome by colindaven 6.3k
It's also worth mentioning `Barrnap` is in the bacterial annotation system **Prokka**. `Prokka` can be installed on Debian systems with `…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa by Elisabeth Gasteiger ★ 2.4k
See also https://www.uniprot.org/help/negative_datasets
Comment: Sheep reference genome remapping coordinates by valentinatsar • 0
Thank you for your response As I can understand this tool takes sequence input files right? I have genome-wide genotypes instead of sequen…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa by me ▴ 750
Ok I made this into an answer. Could you please accept it as such.
Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa by me ▴ 750
You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
Comment: How to compare the quality of assemblies by GenoMax 141k
Are there any short read datasets available in SRA? Can you try and see how many left over reads remain after you align to both of your ass…
Comment: Korean human genome reference file by GenoMax 141k
From NCBI: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001712695.1/ Use the `Download` button or `curl/datasets`.
Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR by GenoMax 141k
> But it keeps giving error Please tell us what the error is.
Answer: 10x VDJ (TCR/BCR) BAM to fastq by GenoMax 141k
Looking at the information about the BAM file in the link included at the end of this sentence, it seems that the BAM file does not contain…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa by Jacky • 0
I got it, thank you for your response.
Answer: DEseq2 by ATpoint 81k
The DESeq2 input is a numeric count matrix (or data.frame) with rows being genes/observations and columns being samples/cells/specimen. Ple…
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