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895 results • Page 5 of 18
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News: Training - RADseq data analysis
SNP RADseq Stacks
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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817
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News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
0
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0
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722
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
6
votes
7
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2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
0
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0
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789
views
News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 3.8 years ago by ▴ 120
0
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0
replies
943
views
News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by 11k
0
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0
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813
views
News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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1.1k
views
News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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904
views
News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by 11k
0
votes
0
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650
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
2
votes
0
replies
662
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 10 months ago by 43k • written 3.9 years ago by 141k
0
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0
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518
views
News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
0
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0
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783
views
News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
0
votes
0
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759
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
1
vote
0
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826
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 230
1
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0
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1.1k
views
News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 110
1
vote
3
replies
1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
0
votes
0
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595
views
News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
0
replies
566
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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734
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by ▴ 30
0
votes
0
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737
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
replies
671
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
662
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
replies
657
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
replies
742
views
News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
replies
694
views
News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
1
vote
0
replies
830
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
0
votes
0
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570
views
News: The Veterans Health Administration (VHA) Innovation Ecosystem and precisionFDA are launching the COVID-19 Risk Factor Modeling Challenge on June 1st
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
0
votes
0
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790
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
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508
views
News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
4
replies
1.1k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
replies
713
views
News: Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis Modeling RNA-Seq Molecular-design
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
replies
718
views
News: Intermediate Python for Bioinformatics 2020
python data-analysis
updated 10 months ago by 43k • written 3.9 years ago by • 0
0
votes
0
replies
690
views
News: One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
0
votes
0
replies
706
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
replies
656
views
News: Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis Genotype Variant-calling next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
replies
668
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 3.9 years ago by • 0
0
votes
0
replies
565
views
News: Check Out The Upcoming Federal Crowdsourcing Webinar Series: A precisionFDA Strike for Public Health
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
1
reply
1.4k
views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
0
votes
0
replies
883
views
News: Training in Metagenomics Data Analysis, May 26-29,2020
training Metagenomics next-gen Data-analysis
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
738
views
News: The precisionFDA Truth Challenge V2 is now Live!
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
573
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
804
views
News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 10 months ago by 43k • written 4.0 years ago by 5.3k
0
votes
0
replies
526
views
News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
6
votes
4
replies
1.3k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
805
views
News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
0
votes
0
replies
837
views
News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
2
votes
0
replies
651
views
News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
738
views
News: Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course progranming Python
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
895 results • Page 5 of 18
Recent Votes
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Answer: Downloaded pdb's on rcsb.org
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Recent Replies
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool by GenoMax 141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org by Ram 43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like: https://www.rcsb.org/search?requ…
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