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News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 2.3 years ago by ▴ 110
0
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1
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1.1k
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News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 7 months ago by 40k • written 2.6 years ago by 10k
5
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0
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1.1k
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News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 7 months ago by 40k • written 2.4 years ago by ▴ 50
0
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0
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607
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News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 7 months ago by 40k • written 2.5 years ago by ★ 2.3k
0
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0
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647
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News: Learn how to do modern reproducible data science
Snakemake Workflows Nextflow
updated 7 months ago by 40k • written 2.5 years ago by ★ 2.3k
0
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0
replies
533
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News: Noncoding RNA conference (including bioinformatics)
conference RNA noncoding-RNA
updated 7 months ago by 40k • written 2.5 years ago by ▴ 20
0
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0
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619
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News: Spring Bioinformatics Courses @ Edinburgh Genomics
metagenomics RNA-Seq SNP training
updated 7 months ago by 40k • written 2.5 years ago by ▴ 40
0
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1
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948
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News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 7 months ago by 40k • written 3.1 years ago by ▴ 150
1
vote
0
replies
710
views
News: Online Training - Analysis of Transposable elements
genome assembly sequence
updated 7 months ago by 40k • written 2.6 years ago by ★ 2.3k
0
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0
replies
595
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News: Three x 2day online Python courses
Python
updated 7 months ago by 40k • written 2.6 years ago by ▴ 60
0
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0
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601
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News: Nine x 2day online R courses
R
updated 7 months ago by 40k • written 2.6 years ago by ▴ 60
3
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0
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640
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News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 7 months ago by 40k • written 2.6 years ago by ▴ 270
5
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1
reply
1.1k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 7 months ago by 40k • written 3.0 years ago by 21k
0
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1
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704
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News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 7 months ago by 40k • written 2.6 years ago by ▴ 50
1
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0
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1.3k
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News: 3-day ONLINE TRAINING - NEXTFLOW
workflow Nextflow
updated 7 months ago by 40k • written 2.6 years ago by ★ 2.3k
0
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0
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712
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News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
Bioconductor RNA-Seq Single-Cell R
updated 7 months ago by 40k • written 2.6 years ago by ★ 2.3k
3
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0
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952
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News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
0
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0
replies
287
views
News: Biosoftics. An Enovation
assembly gene alignment sequence
updated 3 months ago by 40k • written 2.7 years ago by ▴ 10
0
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0
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746
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News: Cellosaurus release 37 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 2.7 years ago by ▴ 110
1
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1
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829
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News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
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0
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1.1k
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epigenetics Bisulfite Methylation
updated 7 months ago by 40k • written 2.7 years ago by 10k
1
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0
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648
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News: Online training: Advanced Programming in R
Programming R
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
0
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0
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632
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News: Tutorial on Detecting Structural Variants in ONT data
structural-variants ONT
updated 7 months ago by 40k • written 2.7 years ago by • 0
0
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0
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1.2k
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
NGS pipeline Nextflow
updated 7 months ago by 40k • written 2.7 years ago by 10k
0
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0
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679
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News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen genome SNP
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
0
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1
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1.0k
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News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 7 months ago by 40k • written 2.7 years ago by 10k
3
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0
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994
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News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
2
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0
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619
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News: ONLINE TRAINING - Web Applications Development with R Shiny
Shiny R
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
0
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0
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600
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News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq Nanopore
updated 7 months ago by 40k • written 2.7 years ago by ★ 2.3k
2
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0
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724
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News: Online training - Computational Bayesian methods using brms in R
Bayesian-Statistics R
updated 7 months ago by 40k • written 2.8 years ago by ★ 2.3k
0
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0
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648
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News: ONLINE training - Eukaryotic Metabarcoding
eDNA Metabarcoding
updated 7 months ago by 40k • written 2.8 years ago by ★ 2.3k
0
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0
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854
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
ncbi blast
updated 7 months ago by 40k • written 2.8 years ago by 134k
2
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0
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809
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News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore
updated 7 months ago by 40k • written 2.8 years ago by ★ 2.3k
0
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0
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1.3k
views
News: Online training - Proteomics in R and Bioconductor
Bioconductor R Proteomics
updated 7 months ago by 40k • written 2.9 years ago by ★ 2.3k
0
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0
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704
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News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq Workshop RNA-Seq
updated 7 months ago by 40k • written 2.9 years ago by 10k
0
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0
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671
views
News: Cellosaurus release 36 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 2.9 years ago by ▴ 110
8
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1
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2.6k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 7 months ago by 40k • written 10.2 years ago by 11k
0
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0
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698
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News: Online Training: Epigenomics
ChIP-Seq next-gen RNA-Seq
updated 7 months ago by 40k • written 2.9 years ago by ★ 2.3k
1
vote
0
replies
747
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News: UniProt survey: Tell us what protein information is important to you
uniprot proteome genome
updated 7 months ago by 40k • written 2.9 years ago by ★ 2.3k
0
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0
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612
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News: dbSNP/ALFA Video and Live Event (October 29, 2020 at 12noon EST)
genome SNP
updated 7 months ago by 40k • written 2.9 years ago by ▴ 70
1
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0
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1.2k
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News: NCBI Web BLAST now offers RefSeq Select databases for faster searches and better results
blast
updated 7 months ago by 40k • written 2.9 years ago by 134k
0
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0
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761
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News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS IN HUMANS, PLANTS AND ANIMALS
sequencing genome
updated 7 months ago by 40k • written 2.9 years ago by ★ 2.3k
2
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0
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734
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News: Get Ensembl training, virtually
ensembl training
updated 7 months ago by 40k • written 2.9 years ago by 23k
0
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0
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1.1k
views
News: Online Training - Nanopore direct RNA Sequencing
RNA-Seq Nanopore
updated 7 months ago by 40k • written 3.0 years ago by ★ 2.3k
0
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0
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692
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News: rPHG v0.1.11 Updates
rphg
updated 7 months ago by 40k • written 3.0 years ago by • 0
1
vote
0
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675
views
News: Interested in Genome Assembly using long-reads?
assembly Nanopore PacBio
updated 7 months ago by 40k • written 3.0 years ago by ★ 2.3k
1
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0
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663
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News: Making molecular data FAIR for ML
ml fair molecular-data
updated 7 months ago by 40k • written 3.0 years ago by ▴ 270
5
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2
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4.4k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 7 months ago by 40k • written 6.7 years ago by 7.5k
0
votes
0
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734
views
News: Training - Genome Assembly with Pacbio and HIC data
Assembly assembly
updated 7 months ago by 40k • written 3.0 years ago by ★ 2.3k
2
votes
0
replies
2.5k
views
News: Primer-BLAST can now design primers for a group of related target sequences!
primer-blast blast
updated 7 months ago by 40k • written 3.0 years ago by 134k
1,000 results • Page 5 of 20
Recent Votes
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
How to identify 16s sequences from binning data(contigs)?
geom_signif() uses t-test to compare between more than 3 groups... Isn't this wrong?
Answer: Filter transcription factors
Comment: Calculation of TMB on gene level
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
Comment: ATAC-seq troubleshoot - Just Noise
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Recent Replies
Comment: gene correlations in between two groups by ATpoint 76k
And how should I know this? I cannot read minds, nor see your screen, data or anything. Please ask a good question with necessary details. …
Comment: gene correlations in between two groups by edus_bioinfo ▴ 40
Thanks. But they are already analyzed. Afaik it analyzes raw data. In my dataset for each gene there is score. I want to interpret the data…
Answer: GWAS phenotype by dthorbur ▴ 550
Hello again. Yes, you can conduct GWAS using binary trait data, but it comes with a whole suite of complications. See [this](https://ww…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by RM123 ▴ 10
Hello Dariober, That seems like a good solution, however I'm pretty new to R. Could you tell me how I can do that?
Comment: how to create a loop in R by Nicolas Rosewick 10k
Not really a bioinformatics related question. Start by looking at R tutorial, there is plenty of them online e.g. : https://www.statmethods…
Comment: Violin plot (Monocle 3) - Troubleshooting by fracarb8 ★ 1.2k
You did not add the screenshot.
Answer: BED files by Alex Reynolds 35k
Generically via `bedmap`: ``` bedmap --echo --echo-map --count exome.bed annotations.bed > answer.bed ``` The `annotations.bed` fil…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by dariober 14k
It seems to me that anova followed by HSD is a more sensible approach than applying independent t-tests. Granted this is the first time I s…
Comment: BED files by barslmn ★ 1.8k
I am guessing you want the annotation files. https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/
Comment: Filter human transcription factors by Alex Reynolds 35k
Curious how redundant these TFs are. Jeff Vierstra has done some analysis on this to simplify model sets: https://www.vierstra.org/resource…
Comment: Read block operation failed with BAM file by Alex Reynolds 35k
https://github.com/samtools/htslib/pull/1676 patches a seek issue in `htslib` (upon which `samtools` and `pysam` depend)
Comment: Merging the filename with tsv files for master file by barslmn ★ 1.8k
Could you add samples from your files and your expected output.
Comment: Download an example of fully-imputed VCF files ? by barslmn ★ 1.8k
Check out the 1000 genomes project. https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
Comment: obtaining circular RNAs' sequences from circBase by Barry Digby ★ 1.2k
Sorry my mistake! it’s been a minute since I’ve used these sites. Yes that it is common place, what is the goal of your analysis using th…
Comment: gene correlations in between two groups by ATpoint 76k
Use specialized software to analyse CRISPR/RNAi data, such as MAGeCK.
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