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News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 17 months ago by 39k • written 8.7 years ago by 154k
3
votes
2
replies
2.4k
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News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 12 weeks ago by 39k • written 8.3 years ago by 103k
2
votes
2
replies
1.4k
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News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 14 days ago by 39k • written 4.9 years ago by ▴ 10
1
vote
2
replies
451
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News: Course: Network Analysis in R
NetworkAnalyis R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
2
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2.4k
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News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 27 days ago by 39k • written 6.2 years ago by ▴ 110
6
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2
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1.9k
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News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 23 days ago by 39k • written 5.9 years ago by 9.9k
0
votes
2
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2.0k
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News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 3 months ago by 39k • written 10.5 years ago by 9.9k
15
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2
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10k
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News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 10 months ago by 39k • written 7.4 years ago by ★ 1.3k
2
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2
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2.4k
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News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 21 days ago by 39k • written 5.6 years ago by ★ 2.3k
1
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2
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News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 2 hours ago by 39k • written 3.2 years ago by ★ 3.5k
4
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2
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2.9k
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News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 9 weeks ago by 39k • written 7.7 years ago by ★ 2.2k
0
votes
2
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1.3k
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 27 days ago by 39k • written 6.1 years ago by ▴ 70
0
votes
2
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609
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
13 months ago by PeterC_NCBI ▴ 260
0
votes
2
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840
views
News: Training - Introduction to Deep Learning
DeepLearning Python MachineLearning Programming News
2.8 years ago by carlopecoraro2 ★ 2.3k
6
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2
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2.3k
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News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 7 weeks ago by 39k • written 6.3 years ago by ★ 2.3k
0
votes
2
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1.4k
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News: Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen SAM alignment sangenix
updated 7 weeks ago by 39k • written 6.4 years ago by ▴ 750
0
votes
2
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1.9k
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News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 20 days ago by 39k • written 5.4 years ago by 9.9k
1
vote
2
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2.1k
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News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 19 days ago by 39k • written 5.3 years ago by ★ 2.3k
14
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2
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5.1k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 8 weeks ago by 39k • written 7.0 years ago by ★ 5.2k
0
votes
2
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1.5k
views
News: M.Phil Program in Bioinformatics
education career
updated 11 weeks ago by 39k • written 7.6 years ago by • 0
3
votes
2
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3.6k
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News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 3 months ago by 39k • written 10.4 years ago by 20k
1
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2
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1.6k
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News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen GATB
updated 8 weeks ago by 39k • written 6.7 years ago by ▴ 140
11
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2
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3.5k
views
News: Coursera: Computational Molecular Evolution
course
updated 3 months ago by 39k • written 10.0 years ago by 154k
1
vote
2
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890
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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 12 days ago by 39k • written 4.3 years ago by ▴ 30
5
votes
2
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4.3k
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News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 3 months ago by 39k • written 6.4 years ago by 7.5k
3
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2
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1.0k
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News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 15 days ago by 39k • written 5.0 years ago by ★ 3.0k
2
votes
2
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776
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News: Interested in Machine Learning?
deep-learning machine-learning
updated 8 days ago by 39k • written 4.1 years ago by ★ 2.3k
0
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2
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1.7k
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News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 26 days ago by 39k • written 5.9 years ago by ▴ 750
9
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2
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14k
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News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 18 months ago by 39k • written 8.9 years ago by ★ 2.2k
0
votes
2
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1.9k
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News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 13 months ago by 39k • written 8.3 years ago by 98k
2
votes
2
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1.7k
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News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 11 months ago by 39k • written 8.1 years ago by ★ 1.6k
0
votes
2
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1.8k
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News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 20 days ago by 39k • written 5.4 years ago by 130k
1
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2
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1.2k
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 16 days ago by 39k • written 5.2 years ago by ▴ 70
6
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2
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1.4k
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News: Biostars On The Genome Technology Cover
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
5
votes
2
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3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 3 months ago by 39k • written 9.6 years ago by ★ 2.3k
1
vote
2
replies
759
views
News: New chat server (Discord) for bioinformatics
community
4 months ago by Samuel Lampa ★ 1.3k
2
votes
2
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1.7k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 8 weeks ago by 39k • written 6.5 years ago by ★ 2.3k
7
votes
2
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2.1k
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News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 10 months ago by 39k • written 7.5 years ago by ★ 2.3k
13
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2
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1.2k
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News: Thank you Biostars!
meta
updated 8 days ago by 39k • written 4.1 years ago by ▴ 140
3
votes
2
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857
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 12 days ago by 39k • written 4.4 years ago by • 0
2
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2
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1.2k
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News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 14 days ago by 39k • written 5.0 years ago by ★ 5.2k
8
votes
2
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691
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News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 11 weeks ago by 39k • written 3.4 years ago by 9.9k
11
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1
reply
2.6k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 10 months ago by 39k • written 6.9 years ago by 9.9k
2
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1
reply
1.7k
views
News: In a recent Nature News : "Papers with shorter titles get more citations"
citations
updated 9 weeks ago by 39k • written 7.8 years ago by ★ 1.2k
7
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1
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3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 3 months ago by 39k • written 9.3 years ago by 9.9k
0
votes
1
reply
672
views
News: Advanced R Programming Course
R
updated 16 days ago by 39k • written 5.1 years ago by ★ 2.3k
2
votes
1
reply
2.0k
views
News: Igb 8 Webinar Starts At 1 Pm Eastern
visualization genome-browser bam rna-seq
updated 3 months ago by 39k • written 9.6 years ago by ★ 2.3k
0
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1
reply
1.2k
views
News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 23 days ago by 39k • written 5.9 years ago by ▴ 70
1
vote
1
reply
1.1k
views
News: Codondex $100,000 Bio Hunt Awards
RNA-Seq sequencing gene
updated 8 weeks ago by 39k • written 6.6 years ago by • 0
0
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1
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1.5k
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News: Webinar Series: Diving Deep into Next Generation Sequencing (NGS) Data Analysis
NGS sangenix webinar
updated 8 weeks ago by 39k • written 6.6 years ago by ▴ 750
1,000 results • Page 5 of 20
Recent Votes
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
A: Mouse promoter regions
Answer: How to get information about promoter from bulk-RNAseq?
A: Extracting Flanking Regions across TSS using R scripts
A: Mouse promoter regions
A: Finding zebrafish promoters ENSEMBL
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Recent Replies
Comment: pal2nal -nogap -nomismatch options not working by Marie • 0
Hi, did you end up solving this? I am running into the same issue. Marie
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
and what about enhancer? is it possible to do it from a bulk-RNAseq?
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
yes! clearly the terminology on my side needs to improved!
Comment: How to get information about promoter from bulk-RNAseq? by rpolicastro 12k
Generally speaking, most promoters only initiate transcription for a single gene, with a single gene potentially having multiple promoters …
Answer: How to get information about promoter from bulk-RNAseq? by Trivas ★ 1.2k
I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of th…
Comment: How to add annotation columns with specific colors to the heatmap? by Ram 39k
Show us your exact code - it is quite easy to tweak colors in ComplexHeatmap with the `col=` argument.
Comment: VCF file CSQ flag by Ram 39k
True, but it's not technically impossible to annotate GVCFs, which is why I did not address that point.
Comment: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
@genomax Sorry for the delay in reply. We're still working out the details of what exactly to provide. One idea is to provide just the rep…
Comment: Shannon's Entropy by Sliding Window in R by rohitsatyam102 ▴ 690
Hi Were u able to achieve this?
Comment: Differences in GTF files hg19 and hg38 by GenoMax 130k
Since this is not an answer to the original question do not add it as such. I moved your last comment to the correct spot it should have be…
Comment: VCF file CSQ flag by Pierre Lindenbaum 154k
if your talking about the gvcf produced by HaplotypeCaller with ERC=GVCF, you don't annote g.vcf files , you must first merge the g.vcf.f…
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Ram 39k
https://www.biostars.org/u/127538/ : Please delete this question or it will be deleted by moderators in a few days.
Comment: VCF file CSQ flag by Ram 39k
A gvcf files has blocks for both variant loci and non-variant loci, so you won't see a CSQ for each record, only for those variant loci wit…
Comment: Differences in GTF files hg19 and hg38 by heureuse • 0
Thank you very much. I get it from UCSC.
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Arup Ghosh 3.2k
This post does not fit the theme of this forum.
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