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1,000 results • Page
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News:
Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen
SAM
alignment
sangenix
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Persistent LABS
▴ 750
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 9 months ago by
Ram
43k • written 4.5 years ago by
Lars
★ 1.0k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
16 months ago by
David Langenberger
11k
2
votes
2
replies
2.2k
views
News:
De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.7 years ago by
JohnBlue81
▴ 500
2
votes
2
replies
1.1k
views
News:
Bioinformatics Solutions on AWS
Cloud
AWS
updated 2.8 years ago by
Ram
43k • written 2.9 years ago by
Jillian
▴ 20
1
vote
2
replies
2.3k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 10 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.4k
2
votes
2
replies
489
views
News:
Unix and Shell Scripting for Bioinformatics course
Bash
Unix
Shell-Scripting
3 months ago by
carlopecoraro2
★ 2.4k
1
vote
2
replies
647
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
14 months ago by
carlopecoraro2
★ 2.4k
11
votes
2
replies
3.7k
views
News:
Coursera: Computational Molecular Evolution
course
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Pierre Lindenbaum
160k
6
votes
2
replies
2.5k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
1
vote
2
replies
1.3k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 10 months ago by
Ram
43k • written 6.0 years ago by
Genomics
▴ 70
1
vote
2
replies
1.7k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 9 months ago by
Ram
43k • written 4.0 years ago by
vkkodali_ncbi
★ 3.7k
8
votes
2
replies
890
views
News:
Save time and money through improved onboarding of your NGS data scientists
NGS
data-analysis
updated 12 months ago by
Ram
43k • written 4.2 years ago by
David Langenberger
11k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
7
votes
2
replies
2.3k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 20 months ago by
Ram
43k • written 8.3 years ago by
Chirag Nepal
★ 2.4k
1
vote
2
replies
738
views
News:
Ensembl reduced functionality, early March
ensembl
updated 9 months ago by
Ram
43k • written 4.2 years ago by
Emily
23k
0
votes
2
replies
675
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 9 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Ben_Ensembl
★ 2.3k
1
vote
2
replies
1.8k
views
News:
Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen
GATB
updated 11 months ago by
Ram
43k • written 7.5 years ago by
patrick.durand
▴ 140
3
votes
2
replies
2.6k
views
News:
Samtools/htslib v1.2 released
htslib
samtools
bcftools
updated 12 months ago by
Ram
43k • written 9.2 years ago by
Devon Ryan
104k
11
votes
2
replies
2.4k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Emily
23k
5
votes
2
replies
4.7k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 13 months ago by
Ram
43k • written 7.2 years ago by
EagleEye
7.5k
5
votes
2
replies
1.6k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 10 months ago by
Ram
43k • written 5.6 years ago by
aln
▴ 320
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 10 months ago by
Ram
43k • written 4.9 years ago by
Glory Basumata
▴ 140
2
votes
2
replies
2.0k
views
News:
Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 13 months ago by
Ram
43k • written 10.5 years ago by
Pierre Lindenbaum
160k
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
160k
2
votes
2
replies
2.6k
views
News:
Interview Dealing with RADseq data: some tips from our instructors
NGS
RADseq
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
7
votes
2
replies
2.2k
views
News:
Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS
microRNA
workshop
updated 11 months ago by
Ram
43k • written 7.8 years ago by
David Langenberger
11k
5
votes
2
replies
3.7k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 13 months ago by
Ram
43k • written 10.4 years ago by
Ann
★ 2.4k
1
vote
2
replies
1.7k
views
News:
New chat server (Discord) for bioinformatics
community
14 months ago by
Samuel Lampa
★ 1.3k
0
votes
2
replies
1.7k
views
News:
2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq
sequencing
SNP
Assembly
updated 10 months ago by
Ram
43k • written 6.8 years ago by
clovergenls
• 0
13
votes
2
replies
3.1k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 13 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
0
votes
2
replies
2.0k
views
News:
Illumina iSeq 100 sequencer
firefly
illumina
iSeq100
updated 10 months ago by
Ram
43k • written 6.2 years ago by
GenoMax
140k
0
votes
2
replies
1.0k
views
News:
Training - Introduction to Deep Learning
Deep-Learning
Machine-Learning
Python-Programming
updated 9 months ago by
Ram
43k • written 3.7 years ago by
carlopecoraro2
★ 2.4k
2
votes
2
replies
2.7k
views
News:
ENCODE 2015: Research Applications and Users Meeting
workshop
mouse-encode
encode
updated 12 months ago by
Ram
43k • written 8.8 years ago by
Alex Reynolds
35k
0
votes
2
replies
1.2k
views
News:
20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
variant-calling
RNA-Seq
workshop
11 months ago by
David Langenberger
11k
3
votes
2
replies
668
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
10 months ago by
PeterC_NCBI
▴ 410
3
votes
2
replies
3.8k
views
News:
Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Obi Griffith
20k
6
votes
2
replies
1.8k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Mary
11k
2
votes
2
replies
2.2k
views
News:
2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH
training
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Sean Davis
26k
2
votes
2
replies
711
views
News:
Free online seminars/journal club
seminars
journal-clubs
updated 12 months ago by
Ram
43k • written 3.7 years ago by
kuan-lin.huang
▴ 40
2
votes
2
replies
1.9k
views
News:
Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen
SNP
sequence
updated 11 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
1.6k
views
News:
M.Phil Program in Bioinformatics
education
career
updated 12 months ago by
Ram
43k • written 8.4 years ago by
rrojha143
• 0
15
votes
2
replies
11k
views
News:
Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 20 months ago by
Ram
43k • written 8.2 years ago by
IV
★ 1.3k
2
votes
2
replies
632
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
17 months ago by
carlopecoraro2
★ 2.4k
3
votes
2
replies
1.2k
views
News:
Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS
next-generation-sequencing
updated 10 months ago by
Ram
43k • written 5.8 years ago by
Fabio Marroni
★ 3.0k
2
votes
2
replies
1.4k
views
News:
GeNets: a unified web platform for network-based genomic analyses
networks
pathways
RNA-Seq
visualization
updated 10 months ago by
Ram
43k • written 5.8 years ago by
ivivek_ngs
★ 5.2k
10
votes
2
replies
3.2k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Pierre Lindenbaum
160k
4
votes
2
replies
570
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
6 months ago by
PeterC_NCBI
▴ 410
4
votes
2
replies
3.1k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 12 months ago by
Ram
43k • written 8.5 years ago by
rtliu
★ 2.2k
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Comment: Gene reads all zero for each sample
Comment: Gene reads all zero for each sample
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Comment: Parsing fasta file by coordinates
by
GenoMax
140k
> sequences that are from the same region from those that aren't. could refer to sequence composition and that is the reason we were sugge…
Comment: Low number of both surviving reads after trimming
by
Ram
43k
Please edit your post and add the code parts again, this time use the `101010` code button and NOT the double quote button. The latter is u…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
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... reminds me [https://twitter.com/yokofakun/status/1267877851795259397][1] ( my twitter account is now private) ![ops][2] [1]: https…
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Why did you delete this post, https://www.biostars.org/u/142036/ ?
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dariober
14k
Perhaps more concerning is why you have features (genes?) with small pvalue but fold-change very close to zero. It's also unusual that ther…
Comment: Gene reads all zero for each sample
by
DYLAN NICO
• 0
Thank you for the suggestions. Unfortunately I cannot add any details for lack of information. But I will try using a different alignment a…
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
They are +ve and -ve strands, but identical two by two ... I can filter that out later on. This is probably a very naive question, but what…
Comment: Gene reads all zero for each sample
by
ATpoint
81k
Do I understand correctly that you have one gene you are interested in, but all counts are zero, right? If so, first thing could be to use …
Answer: ONT direct RNA sequencing
by
joe
▴ 470
You should use `cat` on .gz files, part of the magic of .gz ...I guess if you use `zcat` they are unzipped and this is why you get the erro…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
thank you !!
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by
Zhenyu Zhang
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You can only have one active token at a time, but you can copy the same token as many times as you want and use them in different computers…
Comment: Parsing fasta file by coordinates
by
sorrymouse
▴ 120
Yes, thats correct. A lot of the responses are addressing problems other than the one I have - I don't want to cluster the sequences based …
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Not sure if I am missing something but you want 4 copies of the same sequence with a different fasta header?
Comment: Normalization strategies for comparing mapped reads across samples in RNA-seq
by
Ram
43k
> TPM seems like a good method, but it may not be suitable here because it requires gene/transcript length. Also because TPM cannot be com…
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
• 0
I did run the `JoinLayers()` even then it is not working, here is the output before and after ```r DefaultAssay(combined1) <- 'RNA' com…
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