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1,000 results • Page
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9
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4
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2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
19
votes
4
replies
2.5k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
43k • written 7.5 years ago by
David Langenberger
11k
0
votes
0
replies
2.5k
views
News:
Nature Genetics - DNA Methyloma Analysis in Burkitt and follicular lymphomas
workshop
NGS
epigenetics
epigenomics
updated 2.4 years ago by
Ram
43k • written 8.5 years ago by
David Langenberger
11k
2
votes
0
replies
2.4k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics
R
BioCounductor
updated 11 months ago by
Ram
43k • written 6.6 years ago by
c.pecoraro3486
▴ 20
12
votes
3
replies
2.4k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 12 months ago by
Ram
43k • written 8.1 years ago by
Philipp Bayer
8.3k
3
votes
0
replies
2.4k
views
News:
Samtools/htslib/bcftools 1.1 released
htslib
samtools
updated 13 months ago by
Ram
43k • written 9.6 years ago by
Devon Ryan
104k
0
votes
0
replies
2.4k
views
News:
Total RNA Commercial Kit Comparison Study
microarray
NGS
RNA-Seq
qPCR
updated 13 months ago by
Ram
43k • written 9.4 years ago by
andorjkiss
▴ 40
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
0
votes
0
replies
2.4k
views
News:
WORKSHOP - Landscape genetic data analysis using R
genome
R
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
14
votes
1
reply
2.4k
views
News:
The Gene Ontology Handbook (open access)
training
handbook
GO
updated 12 months ago by
Ram
43k • written 7.3 years ago by
Christophe Dessimoz
▴ 740
2
votes
0
replies
2.4k
views
News:
The NAR annual Web Server Issue is here..
web-servers
updated 13 months ago by
Ram
43k • written 8.8 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
2.4k
views
News:
Intro to Python for Biologists
next-gen
RNA-Seq
SNP
updated 11 months ago by
Ram
43k • written 6.4 years ago by
oliverhooker
▴ 110
11
votes
2
replies
2.4k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Emily
23k
0
votes
1
reply
2.4k
views
News:
Hands-on training in Bioinformatics and Biomedical Data Science
NGS
training
updated 11 months ago by
Ram
43k • written 5.6 years ago by
sahil
▴ 10
2
votes
0
replies
2.4k
views
News:
Bioinformatics Specialization on Coursera is On Demand
Assembly
education
alignment
sequencing
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.9 years ago by
phcompeau
▴ 50
1
vote
2
replies
2.4k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 11 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
4
votes
0
replies
2.4k
views
News:
Upcoming Workshop: Ensembl Perl APIs
ensembl
APIs
Perl
workshops
updated 13 months ago by
Ram
43k • written 9.5 years ago by
Denise CS
★ 5.2k
1
vote
1
reply
2.4k
views
News:
Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 21 months ago by
Ram
43k • written 8.2 years ago by
meyer.ann
▴ 30
3
votes
4
replies
2.4k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 12 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 140
4
votes
0
replies
2.4k
views
News:
Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google
broad
gatk
updated 16 months ago by
Ram
43k • written 8.8 years ago by
William
★ 5.3k
4
votes
0
replies
2.4k
views
News:
2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 18 months ago by
Ram
43k • written 8.7 years ago by
sayonidas03
▴ 100
0
votes
1
reply
2.4k
views
News:
Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS
Nature
Sequencing
updated 16 months ago by
Ram
43k • written 2.1 years ago by
Novogene
▴ 420
0
votes
0
replies
2.4k
views
News:
DEADLINE 18th of March: 2nd Annual Training Course on Viral Bioinformatics and Genomics
virus
genomics
virology
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Joseph Hughes
★ 3.0k
0
votes
3
replies
2.3k
views
News:
Eukaryotic Metabarcoding workshop
next-gen
blast
alignment
updated 12 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.5k
10
votes
7
replies
2.3k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 15 months ago by
Ram
43k • written 8.9 years ago by
ugly.betty77
★ 1.1k
8
votes
2
replies
2.3k
views
News:
The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.0 years ago by
roma
▴ 120
1
vote
0
replies
2.3k
views
News:
APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education
courses
online
updated 13 months ago by
Ram
43k • written 9.4 years ago by
fiochettal
▴ 10
3
votes
0
replies
2.3k
views
News:
Programming for Evolutionary Biology course, Nov 24 - Dec 12 2014, Bogota, Colombia
Perl
R
Linux
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Bert Overduin
★ 3.7k
0
votes
1
reply
2.3k
views
News:
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS
NGS
RNA-Seq
UMI
dna-seq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Genomics
▴ 70
0
votes
9
replies
2.3k
views
News:
Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 13 months ago by
Ram
43k • written 9.8 years ago by
Matt Shirley
10k
4
votes
1
reply
2.3k
views
News:
ENCODE Users' Meeting
encode
ucsc
conference
functional-genomics
ensembl
updated 20 months ago by
Ram
43k • written 8.9 years ago by
Emily
23k
7
votes
2
replies
2.3k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Chirag Nepal
★ 2.4k
2
votes
0
replies
2.3k
views
News:
Course on "Genomic data visualisation and manipulation using Python"
genome
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.6 years ago by
oliverhooker
▴ 60
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by
Ram
43k • written 11.0 years ago by
bioinfo
▴ 830
1
vote
0
replies
2.3k
views
News:
Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by
Ram
43k • written 6.1 years ago by
oliverhooker
▴ 60
0
votes
0
replies
2.3k
views
News:
Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 18 months ago by
Ram
43k • written 8.7 years ago by
rtliu
★ 2.2k
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
2.3k
views
News:
Want to learn more about data visualization with Python? Read our interview to Dr. Martin Jones.
genome
next-gen-sequencing
updated 12 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.3k
views
News:
Workshop on Computational Approaches for Cancer, Supercomputer 2015 meeting in Austin, TX
meeting
supercomputer
cancer
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Sean Davis
26k
5
votes
1
reply
2.3k
views
News:
New version of the GATB library
minia
next-gen
gatb
dsk
updated 2.2 years ago by
Ram
43k • written 9.2 years ago by
edrezen
▴ 730
0
votes
0
replies
2.3k
views
News:
Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp
R
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.5 years ago by
cara
• 0
1
vote
0
replies
2.3k
views
News:
The power and promise of Genome-Wide Association Studies
Meta-analysis
NGS
GWAS
Linux
R
updated 11 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.5k
6
votes
0
replies
2.3k
views
News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Emily
23k
0
votes
0
replies
2.3k
views
News:
Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis
Exome
DNA-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.0 years ago by
piyushkumartiwari
• 0
6
votes
2
replies
2.3k
views
News:
Galaxy-specific Biostar Instance
galaxy
biostars
updated 14 months ago by
Ram
43k • written 10.0 years ago by
martenson
▴ 380
0
votes
0
replies
2.3k
views
News:
Second Annual International Environmental Omics conference to be held in Liverpool, UK. September 15th-18th
Conference
updated 13 months ago by
Ram
43k • written 9.8 years ago by
Daniel
★ 4.0k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
3
votes
5
replies
2.3k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 12 months ago by
Ram
43k • written 7.6 years ago by
EagleEye
7.5k
38
votes
7
replies
2.3k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
9 months ago by
David Langenberger
11k
2
votes
0
replies
2.3k
views
News:
Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA, October 31-November 3, 2017
ngs
next-gen
RNA-Seq
training
updated 12 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 140
1,000 results • Page
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PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
A: Where To Download Pam50 Gene Set?
Answer: Fail to install umap-learn in R
Answer: Fail to install umap-learn in R
Answer: Fail to install umap-learn in R
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Recent Replies
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴ 880
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
GenoMax
141k
Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
Comment: Adding CB tag to bam file
by
Maria
• 0
Sorry for the delay in my answer, I got sidetracked. I am using ```samtools addreplacerg -r "@RG\tID:$cell" -o $cell.bam -h $LINE``` bu…
Answer: Troubleshooting RNA-seq data with DNA contamination
by
haibol2017
▴ 10
We just developed a R package to tackle this problem. Do you have stranded or unstranded RNA-seq data contaminated with gDNA? If you wou…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
GenoMax
141k
`bbduk.sh` can use the transcripts as input. There is a `adapters.fa` included in the `resources` directory of the distribution. You can do…
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Cross posted here (including the code used to make up the counts): https://support.bioconductor.org/p/9157911/#9157959
Comment: To get p-values for the TPM
by
swbarnes2
14k
RSEM returns a kind of p-value if you run it with the "prior-enhanced" option. Did you do that? Are you completely sure that's the value y…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴ 30
i checked both of these programs (`bbduk` and `fastp`) and it seems they use reads as inputs (fastq formats)... how can I trim my transcrip…
Comment: AGeNT LocatIt
by
barslmn
★ 2.1k
He is already giving 32G, 320G for marking duplicates for exome is excessive. Is there a specific reason for using the tool?
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
This looks good. Please try with using `--allow-no-sex flag` plink --bfile your_data_phenoUP --assoc --allow-no-sex --out your_data_ph…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
SC899359_PC75420_A05 SC899359_PC75420_A05 0 0 0 2 SC899360_PC75415_D01 SC899360_PC75415_D01 0 0 0 2 SC899361_PC75425_H05 SC899361_PC75425_H…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates
by
Sofia
• 0
Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
Catalog file lists the genomes included. There seem to be 71365 unique items in field 2. 2 Bacteria WP_000018326.1 4459…
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