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News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 12 months ago by 43k • written 7.1 years ago by • 0
5
votes
1
reply
1.8k
views
News: Google Joins The Global Alliance For Genomics And Health
genomics
updated 13 months ago by 43k • written 10.1 years ago by 161k
5
votes
0
replies
2.2k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 5.4 years ago by 11k
5
votes
3
replies
2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 14 months ago by 43k • written 11.6 years ago by 11k
5
votes
1
reply
1.6k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
5
votes
1
reply
2.6k
views
News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming course R
updated 13 months ago by 43k • written 9.5 years ago by ★ 1.7k
5
votes
0
replies
1.6k
views
News: New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor reproducible-research
updated 13 months ago by 43k • written 8.8 years ago by 26k
5
votes
0
replies
3.0k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 13 months ago by 43k • written 9.7 years ago by 100k
5
votes
2
replies
4.7k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 14 months ago by 43k • written 7.3 years ago by 7.5k
4
votes
0
replies
1.2k
views
News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 10 months ago by 43k • written 5.3 years ago by 19k
4
votes
1
reply
1.4k
views
News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 12 months ago by 43k • written 7.9 years ago by ★ 1.8k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 10 months ago by 43k • written 5.5 years ago by 11k
4
votes
1
reply
2.2k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.7 years ago by ★ 2.0k
4
votes
3
replies
1.9k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 12 months ago by 43k • written 7.3 years ago by ▴ 350
4
votes
0
replies
1.9k
views
News: Viral Bioinformatics and Genomics course August 2017, Glasgow
next-gen
updated 12 months ago by 43k • written 7.2 years ago by ▴ 40
4
votes
2
replies
589
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
4
votes
4
replies
1.8k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
4
votes
1
reply
1.8k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 10 months ago by 43k • written 5.4 years ago by ★ 2.5k
4
votes
0
replies
1.7k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 13 months ago by 43k • written 10.7 years ago by ★ 2.0k
4
votes
1
reply
2.3k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 20 months ago by 43k • written 8.9 years ago by 23k
4
votes
0
replies
1.5k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 14 months ago by 43k • written 11.0 years ago by 18k
4
votes
0
replies
2.8k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 12 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
5
replies
2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 12 months ago by 43k • written 7.9 years ago by ▴ 90
4
votes
0
replies
638
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
10 months ago by David Langenberger 11k
4
votes
3
replies
1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
4
votes
1
reply
642
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 21 months ago by 43k • written 21 months ago by 11k
4
votes
3
replies
2.2k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 13 months ago by 43k • written 10.9 years ago by ▴ 990
4
votes
0
replies
1.5k
views
News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by 43k • written 6.0 years ago by 141k
4
votes
0
replies
2.4k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 13 months ago by 43k • written 9.5 years ago by ★ 5.2k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
1
reply
2.1k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 16 months ago by 43k • written 9.2 years ago by 20k
4
votes
0
replies
2.4k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 16 months ago by 43k • written 8.8 years ago by ★ 5.3k
4
votes
3
replies
1.9k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 16 months ago by 43k • written 8.8 years ago by • 0
4
votes
0
replies
1.4k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
4
votes
2
replies
1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 10 months ago by 43k • written 4.5 years ago by ★ 1.0k
4
votes
0
replies
906
views
News: The BioCompute Object App-a-thon starts on May 14!
standards computation pipeline
updated 13 months ago by 43k • written 4.9 years ago by ▴ 150
4
votes
1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
4
votes
0
replies
2.4k
views
News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 18 months ago by 43k • written 8.7 years ago by ▴ 100
4
votes
0
replies
716
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 10 months ago by 43k • written 4.3 years ago by ▴ 730
4
votes
0
replies
3.0k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 12 months ago by 43k • written 7.9 years ago by ★ 2.6k
4
votes
0
replies
1.8k
views
News: Call for Abstracts for the 18th Annual Bioinformatics Open Source Conference (BOSC 2017)
BOSC OBF
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.2k
4
votes
4
replies
1.7k
views
News: VCFclin working group
vcfclin
updated 13 months ago by 43k • written 10.0 years ago by ▴ 30
4
votes
0
replies
2.2k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 13 months ago by 43k • written 10.2 years ago by ▴ 60
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
4
votes
0
replies
1.9k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
4
votes
2
replies
3.1k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 12 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
0
replies
194
views
News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
3 months ago by David Langenberger 11k
4
votes
0
replies
2.9k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 13 months ago by 43k • written 10.6 years ago by ★ 2.4k
1,000 results • Page 5 of 20
Recent Votes
Comment: Ciriquant not configuring hisat2 indexed files
Comment: Ciriquant not configuring hisat2 indexed files
DNA Methylation: Sequencing Techniques
Comment: How to install Guppy from Nanopore Technologies?
Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR
Answer: Indexing the Reference Genome is not done in STAR
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
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Recent Replies
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file by Maria • 0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Comment: Free/open source 23andme-like analysis by Michael 54k
Noted that 'accurate' wasn't among your criteria ;) Anyway, most variant callers are free open-source software. However, for ancestry ana…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by Pierre Lindenbaum 161k
> server so I cannot use Blat for this purpose. blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by b.contreras.moreira ▴ 160
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`. It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software by colindaven 6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam by Hagen ▴ 10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably by Kai Xin • 0
will look into that. Thank you very much
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
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