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News: M.Phil Program in Bioinformatics
education career
updated 13 months ago by 43k • written 8.5 years ago by • 0
3
votes
2
replies
552
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News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
25 days ago by Johannes W. Dietrich • 0
2
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2
replies
738
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News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
2.2 years ago by SanjidaR_NCBI ▴ 60
2
votes
2
replies
2.2k
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News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 12 months ago by 43k • written 7.4 years ago by 26k
12
votes
2
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437
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News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
14 days ago by David Langenberger 11k
2
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2
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734
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News: Free online seminars/journal club
seminars journal-clubs
updated 13 months ago by 43k • written 3.8 years ago by ▴ 40
0
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2
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2.1k
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News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.4 years ago by 11k
1
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1
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1.9k
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News: 'Spring School 2013 - Epigenetics Of Civilization Diseases', May 27Th - 31St 2013, In Leipzig, Germany
epigenetics
updated 14 months ago by 43k • written 11.4 years ago by 11k
1
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1
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1.8k
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News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 13 months ago by 43k • written 10.5 years ago by 8.3k
2
votes
1
reply
1.7k
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News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 10 months ago by 43k • written 5.1 years ago by 11k
16
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1
reply
5.0k
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News: Samtools/htslib/bcftools 1-3 released
htslib samtools bcftools
updated 12 months ago by 43k • written 8.4 years ago by 104k
3
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1
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1.5k
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News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 13 months ago by 43k • written 10.4 years ago by 161k
4
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1
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2.1k
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News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 16 months ago by 43k • written 9.3 years ago by 20k
0
votes
1
reply
981
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News: Data visualization with Python
snp next-gen sequencing
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
2
votes
1
reply
1.6k
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News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 11 months ago by 43k • written 6.7 years ago by ▴ 10
14
votes
1
reply
2.4k
views
News: The Gene Ontology Handbook (open access)
training handbook GO
updated 12 months ago by 43k • written 7.3 years ago by ▴ 740
3
votes
1
reply
6.8k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 11 months ago by 43k • written 6.4 years ago by 141k
3
votes
1
reply
838
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 10 months ago by 43k • written 4.9 years ago by ▴ 150
0
votes
1
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1.5k
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News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 11 months ago by 43k • written 6.5 years ago by 5.8k
4
votes
1
reply
1.4k
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News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 12 months ago by 43k • written 8.0 years ago by ★ 1.8k
1
vote
1
reply
2.4k
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News: Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 21 months ago by 43k • written 8.2 years ago by ▴ 30
0
votes
1
reply
837
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
5
votes
1
reply
1.1k
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News: New biostar-tools metaport for FreeBSD
freebsd software
2.6 years ago by bacon4000 ▴ 80
2
votes
1
reply
1.8k
views
News: Us Researchers: Help Influence Stem Education With New Nsf Strategies (Deadline Next Tuesday)
education genomics
updated 13 months ago by 43k • written 10.2 years ago by 11k
0
votes
1
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799
views
News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
0
votes
1
reply
1.4k
views
News: Biocuration 2016 review
opendata ontology conference biocuration
updated 12 months ago by 43k • written 8.0 years ago by 26k
10
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1
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2.0k
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News: Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq RNA-Seq NGS
updated 12 months ago by 43k • written 7.2 years ago by 11k
3
votes
1
reply
1.5k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 11 months ago by 43k • written 7.1 years ago by 26k
2
votes
1
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458
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News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
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1
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2.4k
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News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 16 months ago by 43k • written 2.1 years ago by ▴ 420
1
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1
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1.2k
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News: Codondex $100,000 Bio Hunt Awards
RNA-Seq sequencing gene
updated 12 months ago by 43k • written 7.5 years ago by • 0
6
votes
1
reply
2.5k
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News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 13 months ago by 43k • written 9.9 years ago by ★ 2.2k
1
vote
1
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1.4k
views
News: Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 15 months ago by 43k • written 8.9 years ago by 11k
0
votes
1
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1.6k
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News: Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen Assembly RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
1
vote
1
reply
672
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
12 months ago by David Langenberger 11k
1
vote
1
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2.6k
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News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 15 months ago by 43k • written 8.9 years ago by • 0
0
votes
1
reply
1.6k
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News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
0
votes
1
reply
617
views
News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
2.1 years ago by David Langenberger 11k
1
vote
1
reply
722
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 15-17, 2021)
workshop DNAseq RNAseq
updated 2.8 years ago by ▴ 580 • written 2.8 years ago by 11k
0
votes
1
reply
2.3k
views
News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 11 months ago by 43k • written 6.5 years ago by ▴ 70
0
votes
1
reply
646
views
News: International Conference on Renewable & Non-Renewable Energy
next-gen
updated 11 months ago by 43k • written 5.9 years ago by • 0
2
votes
1
reply
873
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
votes
1
reply
1.3k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
8
votes
1
reply
2.7k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 14 months ago by 43k • written 10.7 years ago by 11k
5
votes
1
reply
1.2k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 14 months ago by 43k • written 3.5 years ago by 22k
1
vote
1
reply
1.9k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
0
votes
1
reply
306
views
News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
votes
1
reply
787
views
News: Advanced R Programming Course
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
votes
1
reply
1.1k
views
News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 11 months ago by 43k • written 6.5 years ago by • 0
4
votes
1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
1,000 results • Page 6 of 20
Recent Votes
What are Tiles in Sequencing
What are Tiles in Sequencing
Answer: How to trim transcripts using information from NCBI contamination screen report
Difference Between "Mate Pair" And "Pair-End"
Difference Between "Mate Pair" And "Pair-End"
Comment: To get p-values for the TPM
Comment: HaplotypeCaller - only SNPs
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Recent Replies
Answer: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
Possibly. You will need to know the RefSeq release version. Check in this directory: https://ftp.ncbi.nlm.nih.gov/refseq/release/release-ca…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Hey, can you please show me a few lines of your phenotype updated .fam file? I m seeing there are 7 columns in it, that might me the proble…
Comment: PCA plot (Suggestions Needed) by jkim ▴ 170
How much variance were explained by PC1 and PC2? It doesn't look like that the largest source of variation came from the genotype differenc…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
Thank you and yes, I agree going step back is the best option but I am in a hurry at the moment so I just need to stick to the transcriptom…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much for helping me out! I did the steps you mentioned but still got the same issue as shown in the snapshot ![enter image des…
Comment: different FeatureCounts output for the same data by Istvan Albert 100k
Make sure you are using the same version of featureCounts, it has changed how it deals with paired end reads. The exact same command will p…
Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t by mropri ▴ 150
Thank you, will do Wilcox for now as I only have one control and one treatment, as I get more control and treatment samples, will stick wit…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by Istvan Albert 100k
I think the blog post lines up wit both of our statements. It seems that 2-way binning (pass/fail) already dramatically improves the calls…
Comment: Tax4Fun2 - error by drstalinantony28 • 0
You have to follow this step to solve the issue. (Mostly this problem occurs in the Windows version) 1. If you are using R studio in Windo…
Answer: Tax4Fun2 - error by drstalinantony28 • 0
You have to follow this step to solve the issue. (Mostly this problem occurs in the Windows version) 1. If you are using R studio in Win…
Comment: different FeatureCounts output for the same data by GenoMax 141k
> featureCounts alignment rate is only around 15-20%. You mean assignment rate? It is that low even after allowing for counting of multi-m…
Comment: alignment result by GenoMax 141k
> 20386810 (88.67%) aligned concordantly exactly 1 time This result is fine.
Comment: To get p-values for the TPM by ATpoint 82k
Seconding that. Just use established pipelines, tximport => DESeq2, get your stats and call it a day. Custom pipelines paired with little e…
Comment: Should I remove unlocalized scaffols in reference genome before alignment? by njornet ▴ 20
I don't want reads incorrectly aligned to these scaffolds and loose information of relevant regions, but as you said that probably won't ha…
Comment: To get p-values for the TPM by dsull ★ 5.8k
Your post should be a "com, not an "answer". Use "Add Comment" to request clarifications on an answer someone has provided. tximport can t…
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