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332
votes
8
answers
117k
views
178 follow
8
answers
232
votes
15
answers
64k
views
78 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 10.0 years ago by Biomed4.6k • updated 5.3 years ago by Barry40
141
votes
17
answers
47k
views
118 follow
17
answers
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial written 7.5 years ago by vijay1.5k • updated 21 months ago by MetaTK20
179
votes
16
answers
13k
views
25 follow
16
answers
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen galaxy sequencing written 9.6 years ago by Pierre Lindenbaum128k • updated 6.8 years ago by sarahhunter600
109
votes
8
answers
40k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.0 years ago by Matthieu460 • updated 4.2 years ago by alexisdereeper30
91
votes
7
answers
14k
views
63 follow
7
answers
161
votes
15
answers
44k
views
47 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 8.9 years ago by Panos1.7k • updated 5.7 years ago by bstrs0
66
votes
8
answers
27k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 10.0 years ago by brentp23k • updated 4.7 years ago by Malachi Griffith18k
63
votes
1
answer
5.3k
views
46 follow
1
answer
Tutorial: Informatics of RNA-Seq.
tutorial next-gen rna-seq written 4.8 years ago by geek_y11k • updated 4.6 years ago by Malachi Griffith18k
61
votes
6
answers
9.2k
views
25 follow
6
answers
60
votes
18
answers
21k
views
37 follow
18
answers
63
votes
8
answers
20k
views
31 follow
8
answers
130
votes
7
answers
136k
views
32 follow
7
answers
What Is The Sequencing 'Depth' ?
next-gen sequencing written 10.1 years ago by Pierre Lindenbaum128k • updated 6 months ago by Renesh1.8k
51
votes
6
answers
24k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 9.5 years ago by Bio_X2Y3.8k • updated 4.2 years ago by Biostar ♦♦ 20
65
votes
3
answers
30k
views
39 follow
3
answers
Read Group In Sam/Bam Files: What Do They Exactly Describe?
next-gen samtools bam written 8.1 years ago by Stefano Berri4.1k • updated 4.1 years ago by bshifaw50
72
votes
5
answers
32k
views
18 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 10.1 years ago by Pierre Lindenbaum128k • updated 9.1 years ago by Ketil4.0k
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.8 years ago by User 1586280 • updated 2.0 years ago by endrebak810
57
votes
4
answers
4.0k
views
9 follow
4
answers
75
votes
10
answers
17k
views
42 follow
10
answers
Assessing The Quality Of De Novo Assembled Data
assembly next-gen written 7.9 years ago by Prakki Rama2.4k • updated 21 months ago by Corentin450
47
votes
6
answers
11k
views
39 follow
6
answers
33
votes
2
answers
13k
views
2
answers
Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
R tutorial next-gen gdc tcga written 3.6 years ago by martinguerrerog89300 • updated 14 months ago by david.peeney30
97
votes
5
answers
50k
views
28 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 9.3 years ago by Pierre Lindenbaum128k • updated 3.1 years ago by martin.triska120
99
votes
17
answers
34k
views
53 follow
17
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 8.0 years ago by KS370 • updated 17 months ago by Shixiang50
55
votes
4
answers
22k
views
17 follow
4
answers
Forum: Attention: Bowtie2 And Multiple Hits
forum next-gen mapping bowtie written 7.6 years ago by David Langenberger9.3k • updated 7.6 years ago by dsbreak150
81
votes
9
answers
26k
views
31 follow
9
answers
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 7.3 years ago by diltsjeri440 • updated 23 months ago by alslonik140
35
votes
6
answers
6.6k
views
6
answers
Single Cell RNAseq data analysis protocol
next-gen rna-seq sequencing written 3.9 years ago by Mike1.5k • updated 2.2 years ago by Biostar ♦♦ 20
33
votes
5
answers
5.3k
views
13 follow
5
answers
Short Read Aligners/ Snp Calling Comparison
sequencing next-gen mapping snp comparison written 9.6 years ago by Pierre Lindenbaum128k • updated 6.4 years ago by Biostar ♦♦ 20
84
votes
6
answers
55k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 5.9 years ago by krithika.gu260 • updated 22 months ago by Fred073060
33
votes
5
answers
26k
views
18 follow
5
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 9.6 years ago by Stew1.4k • updated 6.1 years ago by Alex Reynolds30k
22
votes
4
answers
3.5k
views
6 follow
4
answers
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