Showing: next-genreset
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125
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6
answers
126k
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29 follow
6
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What Is The Sequencing 'Depth' ?
next-gen sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 2.7 years ago by jokipokemon00010
311
votes
11
answers
109k
views
157 follow
11
answers
99
votes
5
answers
108k
views
15 follow
5
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How Can I Convert Bam To Sam?
sequencing next-gen sam conversion bam written 8.9 years ago by Biomed4.5k • updated 5.5 years ago by Chris Miller20k
231
votes
15
answers
62k
views
77 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 9.0 years ago by Biomed4.5k • updated 4.3 years ago by Barry40
93
votes
5
answers
46k
views
27 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.3 years ago by Pierre Lindenbaum120k • updated 2.1 years ago by martin.triska110
54
votes
6
answers
46k
views
20 follow
6
answers
81
votes
6
answers
46k
views
48 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.9 years ago by krithika.gu250 • updated 10 months ago by Fred073060
136
votes
17
answers
44k
views
113 follow
17
answers
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial written 6.5 years ago by vijay1.5k • updated 9 months ago by MetaTK20
29
votes
3
answers
41k
views
7 follow
3
answers
Minor allele frequency calculation
next-gen snp written 4.5 years ago by Tark50 • updated 10 weeks ago by pltbiotech_tkarthi170
158
votes
15
answers
40k
views
46 follow
15
answers
How To Efficiently Parse A Huge Fastq File?
sequencing fastq next-gen parsing written 7.9 years ago by Panos1.7k • updated 4.7 years ago by bstrs0
105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.0 years ago by Matthieu430 • updated 3.2 years ago by alexisdereeper30
55
votes
6
answers
37k
views
29 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.3 years ago by Ric140 • updated 7.3 years ago by Ketil3.9k
25
votes
8
answers
37k
views
14 follow
8
answers
52
votes
6
answers
35k
views
15 follow
6
answers
Converting Bam To Fastq
next-gen fastq format tool sequencing written 9.1 years ago by Zach Stednick650 • updated 2.3 years ago by Biostar ♦♦ 20
29
votes
1
answer
34k
views
9 follow
1
answer
Meaning Of Fpkm Value Used By Cufflinks
tophat next-gen cuffdiff sequencing cufflinks gene written 7.8 years ago by Oliver230 • updated 7.8 years ago by Karl330
33
votes
3
answers
33k
views
13 follow
3
answers
from .BAM to .BAI using samtools
next-gen samtools sequencing written 4.6 years ago by Kizuna760 • updated 4.6 years ago by Pierre Lindenbaum120k
37
votes
2
answers
33k
views
6 follow
2
answers
What Is Snp Calling?
next-gen snp sequencing written 9.1 years ago by Giovanni M Dall'Olio26k • updated 8.4 years ago by Joesoap0
97
votes
16
answers
32k
views
51 follow
16
answers
Gene Fusion Detection: Rna-Seq Data
fusion next-gen rna-seq sequencing written 7.0 years ago by KS360 • updated 5 months ago by Shixiang30
94
votes
15
answers
31k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.8 years ago by User 1586280 • updated 12 months ago by endrebak760
70
votes
5
answers
31k
views
17 follow
5
answers
About Paired-End Sequencing
short duplicates next-gen tool sequencing written 9.1 years ago by Pierre Lindenbaum120k • updated 8.1 years ago by Ketil3.9k
42
votes
2
answers
28k
views
10 follow
2
answers
65
votes
3
answers
27k
views
39 follow
3
answers
Read Group In Sam/Bam Files: What Do They Exactly Describe?
next-gen samtools bam written 7.1 years ago by Stefano Berri4.1k • updated 3.1 years ago by bshifaw50
47
votes
7
answers
27k
views
23 follow
7
answers
How To Get Number Of Reads In Bam File Efficiently In Python?
python next-gen samtools sequencing written 8.8 years ago by User 9996800 • updated 8 months ago by Arindam Ghosh160
22
votes
8
answers
27k
views
12 follow
8
answers
How to count fastq reads
reads sequence fastq next-gen written 4.1 years ago by Chenglin110 • updated 9 months ago by johnsonnathant80
18
votes
3
answers
27k
views
5 follow
3
answers
Strand-specific vs. non-strand-specific RNAseq
next-gen strand-specific rna-seq written 4.7 years ago by Y Tb150 • updated 4.7 years ago by Malachi Griffith17k
65
votes
8
answers
26k
views
26 follow
8
answers
Rna-Seq Pipeline
rna next-gen pipeline rna-seq sequencing written 9.0 years ago by brentp23k • updated 3.7 years ago by Malachi Griffith17k
15
votes
2
answers
25k
views
12 follow
2
answers
GTF annotation file for Human
next-gen rna-seq written 5.1 years ago by M K460 • updated 5.1 years ago by Dan D6.8k
25
votes
6
answers
24k
views
16 follow
6
answers
33
votes
6
answers
24k
views
18 follow
6
answers
How To Extract Reads From Bam That Overlap With Specific Regions?
read next-gen bed sequencing bam coverage written 8.5 years ago by Stew1.4k • updated 5.1 years ago by Alex Reynolds28k
51
votes
6
answers
23k
views
17 follow
6
answers
What Metrics Are Best To Describe The "Coverage" Of Rna-Seq Data?
sequencing rpkm next-gen rna data written 8.5 years ago by Bio_X2Y3.7k • updated 3.2 years ago by Biostar ♦♦ 20
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