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Forum: Snakemake vs. Nextflow: strengths and weaknesses

forum snakemake nextflow written 4 months ago by ropolocan • 270 • updated 4 months ago by Sinji • 2.5k

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Tool: NextflowWorkbench: An integrated development environment for workflows

lwt tools workflow nextflow workbench written 2.1 years ago by fac2003 • 160 • updated 2.1 years ago by Istvan Albert ♦♦ 74k

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Recent Replies

C: Repository for Variant Calling Format (VCF) file by Phoe • 10
Thanks! I want to get the vcf file in order to mimic the mutation site, making simulated DNA sequ...
C: Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster by gusa_10 • 0
Problem solved! I just need more memory
C: Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer) by Na Sed • 250
Could you please provide a link to this call for paper in Springer publisher website to verify th...
C: Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster by gusa_10 • 0
Hi Adrian, Thank you very much. I am encountering new problems with the latest version of OMA. A...
C: makeblastdb.exe giving me an unclear error message when creating a database by genomax ♦ 34k
This sounds like an [issue related to sort on windows][1]. Do you have access to a unix machine? ...
C: copynumber package in R - basic R question by Kevin Blighe ♦ 3.5k
Are you sure that you have numeric, character/text, and factor columns where they should be? Can...
C: bash and awk code by Kevin Blighe ♦ 3.5k
Hi Sam, Assuming that everything is in the same format, this should function correctly: sed...
C: How to start analyzing next-generation DNA and RNA sequencing data? by Ben • 0
Thanks a lot for the help.
C: How to start analyzing next-generation DNA and RNA sequencing data? by Ben • 0
Thanks a lot for the help.
A: tagAlign to BAM by venu • 4.3k
`bedToBam` function from `bedtools` suite. Ex: including `sorting` the bam bedToBam -i <...
C: Issues running RNAseqc on my bam file by WouterDeCoster ♦ 22k
Does `hg19.gtf` contain rRNA in the GTF transcript_type field?
C: Removing common SNPs from a set of VCF files by Lina F • 110
Great, thanks for pointing me in the right direction!

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