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Forum: Snakemake vs. Nextflow: strengths and weaknesses

forum snakemake nextflow written 17 months ago by ropolocan • 470

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Tool: NextflowWorkbench: An integrated development environment for workflows

lwt tools workflow nextflow workbench written 3.2 years ago by fac2003 • 170 • updated 3.2 years ago by Istvan Albert ♦♦ 78k

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Recent Replies

C: Failed to populate reference for id 1? by cmdcolin • 930
I think they are the same actually, in BAM header `@SQ SN:chr1 LN:249250621` and in FASTA `&g...
C: Failed to populate reference for id 1? by finswimmer ♦ 7.7k
Hello https://www.biostars.org/u/6166/ , I guess in your reference sequence file the chromosome ...
C: can I identify the function of cluster with high identity of one gene? by jth6974 • 0
Really thanks for your kind advice. I will try to find orthologies between other genes in the Ge...
C: Extracting the full read ID when converting from BAM -> FASTQ by popayekid55 • 50
all the aligner uses header till first space. if you want the full header you need to replace the...
C: How to align reads on reference using python? by cpad0112 • 10k
you can use os library to execute os tools (os.system). but it is not recommended. You can also u...
C: parsing Affymetrix file by seraphya • 0
Are you saying that when it says AC, it doesn't mean heterozygous A from one parent and C from an...
A: CluserProfiler message "No gene can be mapped" by wangchangliang0209 • 0
Hi sbbinfo， I found that there is something wrong with the help document of enrichKEGG. The "gen...
C: Analysis Without Replicates by stevenmarkgalway • 0
That's exactly right Kevin, it's the Log2(1.5). After reading around I gathered some ideas for wh...
C: how can i use python to align dna sequences with t-coffee algorithm?? by biopanda • 40
You will have to write python scripts and call the subprocess module to run each .
C: Analysis Without Replicates by Kevin Blighe ♦ 33k
You choose 0.6 presumably because `log2(1.5) = 0.5849625` ? Did you try to apply the fold change...
A: Contig name in SAM file by WouterDeCoster ♦ 35k
I assume you want to know to which chromosome/contig your reads are aligned. That is the RNAME. Q...
C: Fasttree crashing out of memory when building large species tree by yarivtzur • 0
It seems the issue is only happening with the FastTreeMP and FastTreeDbl versions that I download...

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