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Forum: Snakemake vs. Nextflow: strengths and weaknesses

forum snakemake nextflow written 8 weeks ago by ropolocan • 270 • updated 8 weeks ago by Sinji • 2.5k

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Tool: NextflowWorkbench: An integrated development environment for workflows

lwt tools workflow nextflow workbench written 23 months ago by fac2003 • 160 • updated 23 months ago by Istvan Albert ♦♦ 73k

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United States, 3 minutes ago
Mitchell Cancer Institute, University of South Alabama, 5 minutes ago
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Scholar to WouterDeCoster ♦ 20k
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Popular Question to Michael Dondrup ♦ 42k
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Recent Replies

C: ABySS run problems by Anand Rao • 70
Thank you benv, I will look into syntax for MPI jobs in general on our HPCC, and specifically for...
C: Bedtools merge only part of feature that overlaps, not whole feature by Alex Reynolds ♦ 20k
Or you could just use BEDOPS `gtf2bed`: $ awk '$3 == "gene"' Homo_sapiens.GRCh37.75.gtf | gt...
C: Working example for VCF visualization in Circos by WouterDeCoster ♦ 20k
Thanks for sharing the solution, but there is no need to close the thread.
C: Working example for VCF visualization in Circos by Genebow • 80
I close this problem as I see the solution from Circos tutorial. The VCF file needs to be pars...
C: Any implementation of the edgeR in python by genomax ♦ 32k
[Here][1]. Please use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads...
A: Any implementation of the edgeR in python by Hamid • 10
Thanks man :) Ok, so where is that documentation?
C: Any implementation of the edgeR in python by WouterDeCoster ♦ 20k
> I'm not comfortable with R. Eh, does one ever get comfortable with R? Anyway, as far as I ...
C: samtools: error while loading shared libraries: libbz2.so.1.0: cannot open share by Eric Kay • 0
I had a similar problem and this worked for me. Thanks.
C: Creating Interactive Volcano Plots with R and Plot.ly by steve • 790
1. Are you referring to the hard-coded black arrows on the plot? In this example, that is coming ...
C: sequence in different line by WouterDeCoster ♦ 20k
Exactly ;-) [just some slight Friday night trolling]
C: sequence in different line by Ram ♦ 12k
So, a different delimiter?
C: How do I retrieve a specific region of a chromosome from a local blast database by b10hazard • 0
Ah, you're correct, that was it. The fasta has chr1 as the record ID. It works now. Thanks!

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