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Recent Replies
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C: How to download all searched SRA result data at once? by
sratestimon • 0
Thanks Tim, I will try it out !
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David • 50
OOpps, Was too fast writing my question. I have a fasta file that i have blasted (using diamond ...
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bioinfo8 • 70
Yes, it is exome data. I just calculate depth without any bed file by writing a script for aligne...
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timstuart • 30
I don't use windows myself so I'm not 100% sure, but I think you can now run bash on windows 10.....
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plat • 0
I think conservation depends on the species (or strains) you are looking for (e.g conserved from ...
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C: How to plot coverage and depth statistics of a bam file by
Vivek • 1.7k
If this is exome sequencing data, you should see zero depth in off target regions after QC to rem...
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A: How to plot coverage and depth statistics of a bam file by
bioinfo8 • 70
I have used properly-paired qc-passed reads for chromosome wise depth calculation and plotting. H...
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@Brian, I want to measure the expression of that sequence using RNA-Seq data, I don't want to ext...
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Admittedly it sounds scary at first to change your operating system you got so used to, but I hav...
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Emily_Ensembl ♦ 11k
5kb is the definition given by [Sequence Ontology][1] for upstream and downstream. If you're inte...
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in addition, if you have already plotted depths it means that you have got a temporal R data.fram...
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In graph theory, fully connected means that all pairs of nodes are connected by an edge which mea...
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