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Recent Replies
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C: Problem in using TCGAvisualize_meanMethylation function by
Kevin Blighe ♦ 33k
You are not the person who opened this question; thus, your problem is likely different. Which er...
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C: Getting unusual characters while generating output files in a bash script by
finswimmer ♦ 7.8k
Hello https://www.biostars.org/u/17316/ , the similiar/same question you also asked on [stackexc...
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C: Getting unusual characters while generating output files in a bash script by
S AR • 50
The only thing that change in the read group header will be tID and tSM. that will be the file na...
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C: Problem in using TCGAvisualize_meanMethylation function by
1303823432 • 0
it still can't solve this problem
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RamRS ♦ 19k
Hello keon.arbabi! It appears that your post has been cross-posted to another site: https://foru...
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C: how to plot PCA for microarray normalized data by
b.nota ♦ 5.4k
Did you look in the link I sent? I don't see anything about CDF file being necessary. > e...
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C: how to plot PCA for microarray normalized data by
raya.girish • 20
Hi b.nota Actually i am using new affyemtrix chip for which CDF file is not available so i was n...
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genomax ♦ 59k
https://www.biostars.org/u/49616/ : If an answer was helpful, you should upvote it; if the answer...
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A: how to plot PCA for microarray normalized data by
b.nota ♦ 5.4k
You can import normalized values into `limma`, using `ExpressionSet()` https://www.bioconductor.o...
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marongiu.luigi • 340
Ah, that is very clever! Yes it did find some troubles: $ awk '/[^a-zA-Z]/ && $0 !~"...
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C: Getting unusual characters while generating output files in a bash script by
b.nota ♦ 5.4k
The unique read group header (`string` after `-R`) makes it a bit difficult for a `for` loop, unl...
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C: How to get a matrix gene weights in NMF by
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