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Downloading public RNA-seq raw read counts

firehose tcga rna-seq nih written 9 days ago by F • 3.4k

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400

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News: NIH Strategic Plan for Data Science

data science news nih written 12 months ago by genomax ♦ 64k

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319

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NIH grants - how to acquire body text in addition to just abstracts?

grants nlp publications free-text nih written 14 months ago by Wayne • 990

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506

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Finding HTSeq count data for NIH datasets.

nih rna-seq written 22 months ago by lon.lightly • 0 • updated 22 months ago by colindaven • 1.1k

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1.1k

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News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open

nih news training written 2.4 years ago by Sean Davis ♦ 25k

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NIH roadmap epigenomics data Bam files

nih roadmap-epigenomics written 2.8 years ago by Saad Khan • 330 • updated 2.8 years ago by Denise - Open Targets • 4.8k

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1.5k

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Job: Bioinformatics Core Director, National Heart, Lung and Blood Institute, NIH

nih job director nhlbi written 3.6 years ago by Sean Davis ♦ 25k

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1.2k

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Where can I download old NIH research proposals (Ro1 grant)

nih ro1 written 4.0 years ago by Saad Khan • 330 • updated 4.0 years ago by Sean Davis ♦ 25k

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5 follow

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News: The NIH Software Discovery Index | We invite your comments

software nih news catalog written 4.5 years ago by Sean Davis ♦ 25k • updated 4.5 years ago by Istvan Albert ♦♦ 79k

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Job: National Institutes of Health tenure-track recruitment

nih job written 4.5 years ago by Sean Davis ♦ 25k

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Recent Replies

C: ADVOCATE R package by David_emir • 320
[It is here][1], Its Github repository. [1]: https://github.com/califano-lab/ADVOCATE
C: Outputting strain name on prokka annotation by genomes_and_MGEs • 0
Yeah, already tried with many approaches but couldn't manage. For example, I tried this for F in...
C: Looking for exercises on protein structure modelling by genomax ♦ 64k
There are plenty of learning resources available at [PDB learn page][1]. If you use ideas/materia...
C: Diploid genome gene annotation by lieven.sterck ♦ 4.2k
Is the species you're working on (highly) heterozygotic? If not then dipSPADES is unfortunately n...
C: Outputting strain name on prokka annotation by genomax ♦ 64k
You can do that yourself. Should be a good exercise.
C: CWL: nameext not returning expected array by Tom • 200
Using `cwltool 1.0.20190228155703` and the `biostars_365953-workaround.cwl`, i still don't get fi...
A: Doing MSA for DNA to catch the variations in the sequence by Bastien Hervé ♦ 3.7k
[MultAlin][1] has a similar output, copy your sequences in the text box then in `Presentation opt...
A: Avoid intersection of adjacent regions in GenomicRanges::intersect() by david.mas • 0
Just found that I should be able to do it with the `pintersect` function from a Pair object. In...
C: Looking for exercises on protein structure modelling by jachymb • 0
Something interactive is much preferred.
C: Outputting strain name on prokka annotation by genomes_and_MGEs • 0
Thanks, this should work! Could you please convert this into a loop? Considering I have the strai...
A: model design in rna seq - deseq2 by tw617 • 30
Your method of adjusting the p-value could be too stringent. Look into the default settings of DE...
C: Doing MSA for DNA to catch the variations in the sequence by ismaeilmohamed304 • 10
Thanks to ur support :)

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