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blastn not acknowledging "N" string.

nih blastn tool blast sequencing written 26 days ago by robbenstijn • 0

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360

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5 follow

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Tutorial: NIH CDE browser for TCGA clinical data CDE codes

nih tutorial tcga cde metadata written 4 months ago by Kevin Blighe ♦ 63k

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235

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Download complete list of bacterial and eukaryotic species from NIH Human Microbiome Project

nih human microbiome written 10 months ago by Louis Kok • 20

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383

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Downloading public RNA-seq raw read counts

firehose tcga rna-seq nih written 16 months ago by A • 3.8k

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744

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News: NIH Strategic Plan for Data Science

data science news nih written 2.4 years ago by genomax ♦ 87k

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518

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NIH grants - how to acquire body text in addition to just abstracts?

grants nlp publications free-text nih written 2.5 years ago by Wayne • 1.0k

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755

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Finding HTSeq count data for NIH datasets.

nih rna-seq written 3.2 years ago by lon.lightly • 0 • updated 3.2 years ago by colindaven • 2.3k

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1.4k

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News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open

nih news training written 3.7 years ago by Sean Davis ♦ 26k

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1.6k

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NIH roadmap epigenomics data Bam files

nih roadmap-epigenomics written 4.2 years ago by Saad Khan • 400 • updated 4.2 years ago by Denise CS • 5.1k

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1.8k

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Job: Bioinformatics Core Director, National Heart, Lung and Blood Institute, NIH

nih job director nhlbi written 4.9 years ago by Sean Davis ♦ 26k

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1.6k

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Where can I download old NIH research proposals (Ro1 grant)

nih ro1 written 5.3 years ago by Saad Khan • 400 • updated 5.3 years ago by Sean Davis ♦ 26k

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2.0k

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News: The NIH Software Discovery Index | We invite your comments

software nih news catalog written 5.8 years ago by Sean Davis ♦ 26k • updated 5.8 years ago by Istvan Albert ♦♦ 84k

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1.3k

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Job: National Institutes of Health tenure-track recruitment

nih job written 5.9 years ago by Sean Davis ♦ 26k

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Recent Awards • All »

Appreciated to Pierre Lindenbaum ♦ 129k
Scholar to genomax ♦ 87k
Teacher to Pierre Lindenbaum ♦ 129k
Appreciated to Assa Yeroslaviz • 1.4k
Teacher to rpolicastro • 540
Epic Question to Istvan Albert ♦♦ 84k

Recent Replies

C: [GNOMAD v2]How to count the number of heterozygous individuals by scrap • 0
I think it is because `nhomalt` is the number of individuals homozygous for the *alternate allele...
C: Paired-End Reads and Variant Calling by Pierre Lindenbaum ♦ 129k
what are the error/messages displayed ?
C: efetch by UID list returns more UIDs than requested by genomax ♦ 87k
I only get one result when I ask for that Accession number. $ efetch -db protein -id "AAF41...
C: Normalizing Bigwig values by jared.andrews07 ♦ 6.4k
Yes, feature counts should work fine, or [csaw](https://bioconductor.org/packages/3.11/workflows/...
C: How to extract reads on positive strand for a specific region from bam? by venkat • 0
this is what I have done already. But I don't understand when I visualized the `sample_specificre...
C: How to extract reads on positive strand for a specific region from bam? by cpad0112 ♦ 13k
Refer to https://www.biostars.org/p/14378/
C: grep -v command by cpad0112 ♦ 13k
Try with -w or word boundary and ^ anchor. $ cat test.txt chr1 chr111 chr11 chr1 ...
C: How to keep the top hits only in the output file of hmmscan? by genomax ♦ 87k
Please use: https://www.biostars.org/p/309884/
C: How to keep the top hits only in the output file of hmmscan? by audrey.durand • 0
https://freeimage.host/i/d0LcrX
C: Odd Fastq sequences; 50% Aligned more than once by genomax ♦ 87k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
A: Odd Fastq sequences; 50% Aligned more than once by pjferrandi • 0
Indeed, these data were small RNA seq specific data. My PI is in the process of getting the corre...
C: How to download a Pfam database for hmmer searches? by audrey.durand • 0
Thank you for your help genomax!

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