nmr Posts

C: convention from vcf to plink by RamRS ♦ 21k
Please use the formatting bar (especially the `code` option) to present your post better. You can...
C: convention from vcf to plink by RamRS ♦ 21k
`just-acgt`is new to 1.9. If you're sure you're using the right version, try `'just-acgt'` instea...
A: Trouble converting clustal to nexus by SMK • 490
Hi [mac03pat][1], Please check out [Question: Convert Clustal To Nexus Format In Python][2]. Fro...
C: What is the difference between SRR, DRR, ERR ? by hsrp950 • 0
Thank you you mean that it's the same ? specific run accession will be found in the three databas...
C: SRR/ERR/DRR prefixes in SRA - What's the difference? by Malka • 0
So does that mean that all SRR codes have equivalent DRR and ERR codes? The list I have contains...
C: Limma package, how to correct by age and sex? by ATpoint ♦ 17k
I am not a statistician so I add this as comment rather than answer: I think from a biological pe...
A: What is the difference between SRR, DRR, ERR ? by genomax ♦ 67k
The first letter of the accession prefix shows which International Nucleotide Sequence Database C...
A: visualizing the Shallow whole genome sequencing on the UCSC by bernatgel • 1.9k
Hi Sara, If you have shallow WGS you'll probably want to plot a whole genome view or at least a ...
C: Bash not finding file by mac03pat • 10
Not sure why the error appeared but files were output! Good to go, thank you.
C: How to extract nucleotide sequence of select genes from a text file with Genbank by SMK • 490
You're welcome. Changing from `if feature.qualifiers["aSDomain"][0] == "PKS_KS":` to `if feature....
C: what is the best way to calculate significant differences in tss profiles? by mrals89 • 10
Echoing ATpoint for a second, you are trying to test for differences between singletons, which is...
C: How to extract nucleotide sequence of select genes from a text file with Genbank by mac03pat • 10
This worked great, thank you again SMK. One more question if you don't mind. The previous result...

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