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China, 1 minute ago
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Supporter to liorglic • 280
Teacher to genomax ♦ 80k
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Recent Replies

C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by wm • 350
@genomax, Thanks, I did not consider the situation, PE reads trimmed separately, as you mentioned...
C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by genomax ♦ 80k
This advice is not correct. By doing this you are bound to mess up the order of reads in the file...
C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by ATpoint ♦ 32k
`repair.sh` from bbmap does all this automatically while being more reliable since your solution ...
C: R SNPRelate and PLINK PCA eigenvectors negatives of each other by genomax ♦ 80k
Please don't delete posts once they have received a comment/answer.
A: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by wm • 350
The two files fastq files might not a pair of PE reads, or one of the file is truncated. ### If ...
C: Handling bwa double free or corruption related core dump on an HPC by genomax ♦ 80k
Did your sys admins install the program? How much memory are you allocating to this job? Looking...
C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by ATpoint ♦ 32k
Please post all commands related to download and conversion from sra to fastq. I guess the file c...
C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by shrutidabral • 0
Length of reads R1 : 31988936 R2 : 32047104 I did not trim or manipulate the data . this data i...
A: "C" and "G" positions by Pierre Lindenbaum ♦ 127k
cut -f 1 /path/ref.fa.fai | while read S ; do samtools faidx -n 1 /path/ref.fa $S | awk -v ...
C: "C" and "G" positions by ATpoint ♦ 32k
https://www.biostars.org/p/66752/ Be aware that the list is going to be extensively long and big...
C: Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) by shrutidabral • 0
Length of reads R1 : 31988936 R2 : 32047104
A: Beginner question - transmembrane prediction visualisation on Pymol or Chimera by ledobler_IBP • 0
Dear all, Thanks for try to help, but I believe that I am not being able to explain exactly what ...

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