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naveedhasan2000
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I actually have a list of ensembl ids generated while doing a read count using htseq, i used the reference genome from ensembl. I then trie…
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b.contreras.moreira
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See https://www.biostars.org/p/9486493 and parameter `-max_hsps 1`
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Since the module detection is performed on the TOM, you should go for the TOM.
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The error message you're encountering suggests that there might be duplicate row names in your input data file. check it once again whether…
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orzrzlyo
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Thank you! Also, cell typist would successfully identify the above cell types, however, they seemed to be in a pretrained or pre-organized …
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It seems strange that celltypist would not identify these major cell classes -- you should double check your data quality. For the marker l…
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http://qualimap.conesalab.org/doc_html/index.html Never tried rseqc, but qualimap provides a gene body coverage plot also.
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You can simply impute your genotyped data in TOPMed server. In that way you do not have to deal with downloading the reference panels (not …
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> why the first model doesn't have stats for both variables? Your variables are multicollinear. This will always be true if you have mul…
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bioinfo
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Thank you. That is what I ended up doing.
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What "error code at the top" are you talking about? Error code in response to the `srun -N 1 -t 0:01:00 bash -c "uname -a"` command? Also, …
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More explicitly: ```R G <- mdmr::gower(distance.matrix) eig <- eigen(G) U <- eig$vectors ## this is the MDS embedding matrix lambd…
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You write this "I noticed there may be a few parameters required for a SLURM job that could be missing from your script (partition to use, …
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I think what you should do is do differential expression for your two contrasts: treatment 1 vs control and treatment 2 vs control. DESeq2 …
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leranwangcs
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Thanks for your response! I have no statistics background so a bit hard to figure our the equation you provide with. I just want to find so…
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