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160

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how to normalize tag count to 10 million reads without using homer?

chip-seq normalize written 11 weeks ago by mikysyc2016 • 20 • updated 11 weeks ago by ATpoint ♦ 7.5k

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391

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Ori-Ter normalization [Chip-seq]

next-gen chip-seq normalize written 10 months ago by anu014 • 150

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476

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Normalizing fails due to incorrect column count

vcf normalize written 15 months ago by andrewl • 10

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985

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Compare ChIP-seq data from various experiments

visualisation chip-seq normalize written 24 months ago by bharath.mh24 • 0

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748

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Normalize with Scale to method

R limma normalize written 2.2 years ago by mad.cultist • 0

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1.4k

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Chip-seq common control for two treatments

chip-seq normalize written 3.9 years ago by cg • 10 • updated 3.8 years ago by Ying W • 3.8k

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Recent Replies

C: edirect esearch : exclude given accessions by erwan.scaon • 550
Yes, I get what you mean. I just wanted to achieve my goal (retrieve all full length genome seq...
C: Question: featureCounts error: Assertion `1 != corrected_run' failed. by giuseppe0525 • 20
Thank you for your suggestion. There seemed to be a bug which was fixed in the latest version. I ...
C: gene expression analysis using RNA seq data by Kevin Blighe ♦ 28k
Yes, you can interpret it that zero means no expression. It follows, then, that higher values equ...
C: edirect esearch : exclude given accessions by genomax ♦ 55k
Annotations/collection of meta data is by no means a perfect process and if you repeat this every...
C: Organizing tools/ software by cpad0112 • 8.9k
Use tools like conda, docker to manage software installations. Containerized software is better ...
A: bwa-mem: [bam_sort_core] merging from 0 files and 3 in-memory blocks by WouterDeCoster ♦ 32k
It's not an error, a normal message from samtools sort. For sorting it stores reads either in mem...
C: gene expression analysis using RNA seq data by maryam.akram001 • 0
Thanks Kevin you are right its FPKM-UQ data.Now can you please guide me about what does the value...
A: edirect esearch : exclude given accessions by erwan.scaon • 550
So, here we are : I want to retrieve all full length genome sequences of genus *Salmonella*. Ge...
C: How to combine two .sam files? by Pierre Lindenbaum ♦ 112k
> No @HD tag found. It's something wrong with my BAM files? your sam file are probably missin...
C: How to combine two .sam files? by WouterDeCoster ♦ 32k
1. Make sure you have a recent version of samtools installed 2. `samtools view file1.sam -o fil...
A: How to combine two .sam files? by luzglongoria • 0
I have converted SAM files into BAM files samtools view -bS -o /PATH/file1.sam > file1.ba...
C: How to combine two .sam files? by WouterDeCoster ♦ 32k
It can be more efficient to run alignments in parallel and merge afterwards.

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