nsfilter Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: nsfilter • reset

or Classic search

votes

answer

211

views

answer

nsFilter() almost always return the same number of filtered genes in different microarrays

R nsfilter microarray gene-filtering written 3 months ago by arronar • 140 • updated 3 months ago by Kevin Blighe ♦ 17k

votes

answers

298

views

answers

gsva on custome annotation

gsva nsfilter written 13 months ago by colonppg • 50

Recent Votes

Recent Locations • All »

Brazil, just now
Greece, just now
United States, 1 minute ago
Jodhpur, 2 minutes ago
Belgium, 2 minutes ago

Recent Awards • All »

Popular Question to Paul • 50
Scholar to JJ • 220
Scholar to Michael Dondrup ♦ 43k
Popular Question to kirannbishwa01 • 780
Appreciated to Devon Ryan ♦ 78k
Good Answer to geek_y ♦ 8.4k

Recent Replies

C: Theory v Reality by genomax ♦ 46k
You can use `tblastn` (or `tblastx`) for mapping protein sequence back on to DNA. If these are ve...
C: mRNA to protein by pld ♦ 4.7k
https://github.com/TransDecoder/TransDecoder/wiki
C: Best way to merge multiple VCF files by cpad0112 • 4.5k
1) bcftools-merge or GATK's CombineVariant walker should be fine 2) Best in bioinformatics comes ...
A: mRNA to protein by Elisabeth Gasteiger • 1.4k
For a simple interactive tool, you may also try ExPASy's Translate tool (https://web.expasy.org/t...
C: eggNOG - extracting orthologous sequences by Elisabeth Gasteiger • 1.4k
Apologies for not replying sooner. As you have probably found out since you wrote this, UniProtKB...
C: Finding cancer gene sequences by cpad0112 • 4.5k
user ensembl or UCSC or NCBI genome browsers for gene of interest (here *BRCA1*)
C: Count reads from isoforms in RNA-seq data by nicanicagm • 0
Thanks h.mon, Do you know if Salmon or kallisto requires downloading of all the SRA reads? The t...
C: Question about opensource SNP tools from a Sysadmin by WouterDeCoster ♦ 27k
> and perform analysis on it. You'll have to be a bit more specific here.
C: Criteria for filtering contigs after spades assembly by mohamed_refaat.1992 • 0
Hi Shwethacm, would please explain how to map read back to the assembly for calculating mean depth?
C: Theory v Reality by urema • 0
Yes, I understand some level of experimental verification would be needed - or indeed some probab...
C: Trimming RNA-Seq Data by williamsbrian5064 • 40
Thanks! I will keep those base pairs then!
C: SPAdes assembler-Error code 255 by genomax ♦ 46k
> Failed to determine offset! Specify it manually and restart, please! Try setting `--phred-o...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1921 users visited in the last hour