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nsFilter() almost always return the same number of filtered genes in different microarrays

R nsfilter microarray gene-filtering written 9 months ago by arronar • 150 • updated 9 months ago by Kevin Blighe ♦ 30k

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gsva on custome annotation

gsva nsfilter written 19 months ago by colonppg • 90

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Recent Replies

A: Convert colorspace fastq to basespace fastq by h.mon ♦ 20k
First, do you really need to work with those Solid reads? It is a defunct platform, with not much...
C: Could I delete the unzipped installation folder after building a package? by h.mon ♦ 20k
It depends, you didn't even say if you are running the program from the installation folder, or i...
C: Convert colorspace fastq to basespace fastq by genomax ♦ 57k
Your data may already be in fastq format, if you used `fastq-dump`. Can you show us the output of...
A: blastn: how to show all query list in my blastn results, even if they have no ma by Chirag Parsania • 1.1k
Before you move ahead to find find one best hit, I would strongly suggest you to read [recently p...
A: How to reformat (i.e. to clean) NCBI .fasta archives into a singleline .fasta wi by Chirag Parsania • 1.1k
R solution library(Biostrings) aa_fasta_file <- Biostrings::readAAStringSet(filepath...
C: Using vcftools to filter SNPs by a linkage disequilibrium (r2) threshold by sgalla32 • 0
Kia ora (thank you) Kevin! I just saw your other post here. It was very helpful! https://www.bio...
A: How to reformat (i.e. to clean) NCBI .fasta archives into a singleline .fasta wi by Jung Soh • 10
A solution using the [seqtk][1] toolkit: seqtk seq -Cl0 in.fasta > out.fasta The `-C` opt...
C: Conda on MacOS by steve • 1.7k
why are you using `curl` instead of the `wget` command you posted?
C: How can I make a .bed file from my fasta? by steve • 1.7k
It sounds like your trouble is in the bamtobed step. I would focus on troubleshooting that. Might...
C: How do I modify default ggplot2 axis? by jaqx008 • 40
Thanks Guys. It works now but without the p. I appreciate it. :)
C: How do I modify default ggplot2 axis? by Medhat ♦ 7.9k
let p -> ggplot(DE, aes(x = DE$V2, y = DE$V3, color = DE$V8, pch = DE$V7 > .05)) + ge...
C: How do I modify default ggplot2 axis? by jaqx008 • 40
Where in the code could this fit in? thanks Ive tried adding the limits but not sure were it shou...

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