oma orthologs Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answer

390

views

answer

OMA gene vs splicing variants in the output

orthologs oma orthologs oma pyham written 14 months ago by mateusz.konczal • 0 • updated 14 months ago by adrian.altenhoff • 650

vote

answer

519

views

answer

OMA - How to retrieve orthologs of only one representative of each taxonomy rank?

oma orthologs orthologs oma written 23 months ago by anusblat • 0 • updated 23 months ago by Christophe Dessimoz • 660

vote

answer

549

views

answer

How export HOG viewer tree with orthologs in OMA

oma orthologs oma ortholog written 23 months ago by anusblat • 0 • updated 23 months ago by Christophe Dessimoz • 660

Recent Votes

Recent Locations • All »

Israel, just now
Spain, Barcelona, 1 minute ago
Finland, 1 minute ago

Recent Awards • All »

Good Answer to Kevin Blighe ♦ 61k
Appreciated to Kevin Blighe ♦ 61k
Scholar to WouterDeCoster ♦ 44k
Autobiographer to Foodome Team • 0
Scholar to genomax ♦ 85k
Appreciated to WouterDeCoster ♦ 44k

Recent Replies

C: -m option of HTSeq in featureCounts by morteza.aslanzadeh • 10
Thank you for the comment. With that being said, I go with the default version of alignment mode ...
C: how to filter microbial genome based on quality score by Bioinfonext • 220
Thanks @genomax, now it is working well without -hmm flag.
C: Finding Unique genes in Roary output by elkassah96 • 0
Thank you very much for your comment i used the two commands you wrote and i used gene_presence...
A: How to generate random genomic sequences that are GC- and length-matched to my i by Hughie • 20
I wrote a pure bash script for this purpose, verbose but useful. Wish to see better versions :) ...
C: Counting single-cell ATAC fragments at peaks on BED file by Nico • 0
Hi, thanks a lot, that is exactly what I was looking for. I actually used Signac before but was u...
C: plink2 bgen to vcf ukbiobank by Shicheng Guo • 8.3k
how large it is for ukb_imp_chr21_v3.bgen?
C: Understanding BEDtools summary output by geek_y ♦ 11k
What is this program ? Can you add a link ? like a download page or something ?
C: Counting single-cell ATAC fragments at peaks on BED file by geek_y ♦ 11k
In scATAC, there is no bam file per cell. Its barcode based. FeatureCounts needs individual bam f...
A: Counting single-cell ATAC fragments at peaks on BED file by geek_y ♦ 11k
I am not sure if you have looked up for any tools for scATAC analysis. [Signac][1], part of Seura...
C: Extracting Genes that contribute to 1st PC by Kevin Blighe ♦ 61k
He is referring [I think] to the component / variable loadings. I am not sure that WGCNA supports...
C: Extracting Genes that contribute to 1st PC by reara • 0
> The Principle Components analysis must have the genes factors, and you'd have to pick out th...
C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2 by Kevin Blighe ♦ 61k
Boa tarde! Some people just inspect the bi-plots and make a decision about PCs to include (as cov...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1535 users visited in the last hour