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550
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OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma written 2.0 years ago by johan.aranberg • 0
3
votes
1
answer
1.2k
views
1
answer
Is this warning fatal in OMA
orthologs oma written 4.7 years ago by moranr • 270 • updated 2.1 years ago by RamRS ♦ 30k
1
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0
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699
views
0
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OMA Standalone: "could not read the right number of characters"
oma oma standalone written 2.2 years ago by inactive account • 50
1
vote
1
answer
727
views
1
answer
OMA standalone error
genome software error oma orthologs written 2.2 years ago by pbravakos • 0 • updated 2.2 years ago by adrian.altenhoff • 700
1
vote
1
answer
569
views
1
answer
OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 2.2 years ago by anusblat • 0 • updated 2.2 years ago by Christophe Dessimoz • 700
4
votes
2
answers
783
views
2
answers
Trying to hack OMA to do specific All-v-All searches
orthologs oma written 2.3 years ago by jason.kwan • 0 • updated 2.2 years ago by Christophe Dessimoz • 700
1
vote
1
answer
622
views
1
answer
How export HOG viewer tree with orthologs in OMA
oma orthologs oma ortholog written 2.2 years ago by anusblat • 0 • updated 2.2 years ago by Christophe Dessimoz • 700
0
votes
0
answers
743
views
0
answers
Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.4 years ago by Solowars • 50
0
votes
1
answer
696
views
1
answer
OMA output does not match settings
oma orthologue written 2.7 years ago by ChrisM • 10 • updated 2.5 years ago by adrian.altenhoff • 700
0
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1
answer
706
views
1
answer
Error ruining OMA "OneMachineParallelInfo"
omastandalone oma written 2.5 years ago by dtejadamartinez • 20 • updated 2.5 years ago by adrian.altenhoff • 700
0
votes
0
answers
683
views
0
answers
how to resume an oma job using grid engine
oma gridengine engine oma-standalone grid written 2.6 years ago by dimar.gonzalez.soto • 0
0
votes
1
answer
703
views
1
answer
Gene List and Orthologs
orthologs oma e. coli written 2.7 years ago by shahroze786 • 0 • updated 2.7 years ago by genomax ♦ 91k
4
votes
1
answer
750
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5 follow
1
answer
Bacterial known pathway - the easiest way to find and download 1:1 orthologs to each ferment involved
genome oma written 2.8 years ago by natasha.sernova • 3.7k • updated 2.8 years ago by adrian.altenhoff • 700
2
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2
answers
1.2k
views
2
answers
usage of OMA on a HPC cluster with slurm
oma slurm written 2.8 years ago by Yang • 0
0
votes
1
answer
859
views
1
answer
OMA: gene_function.gaf output file empty
oma written 2.9 years ago by lassancejm • 0 • updated 2.8 years ago by adrian.altenhoff • 700
0
votes
1
answer
928
views
1
answer
OMA Warning Unknown character U
orthologs oma written 2.9 years ago by pnatsidis • 0 • updated 2.9 years ago by natasha.sernova • 3.7k
1
vote
2
answers
859
views
2
answers
OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
orthologs oma written 3.7 years ago by linlinzhao.c • 0 • updated 2.9 years ago by andreag1987 • 0
1
vote
1
answer
900
views
1
answer
OMA - without all vs all
oma orthology written 2.9 years ago by dtejadamartinez • 20
2
votes
2
answers
750
views
2
answers
Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
orthologs oma written 3.0 years ago by robert.zimmermann • 10 • updated 3.0 years ago by david_emms • 110
0
votes
1
answer
916
views
1
answer
OMA standalone, "-c" to just convert the databases AFTER all vs all
oma written 3.0 years ago by gusa_10 • 0 • updated 3.0 years ago by adrian.altenhoff • 700
1
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2
answers
1.2k
views
2
answers
Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster
oma written 3.0 years ago by gusa_10 • 0
2
votes
2
answers
1.2k
views
2
answers
Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 3.0 years ago by jeremias.br • 10
0
votes
1
answer
837
views
1
answer
OMA -c option Bus error
oma written 3.0 years ago by gusa_10 • 0 • updated 3.0 years ago by adrian.altenhoff • 700
4
votes
1
answer
656
views
1
answer
IRI on sparql.omabroswer.org for fingerprint concept e.g. PATSWPL
oma sparql written 3.1 years ago by me • 730 • updated 3.1 years ago by tarcisiotmf • 30
0
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2
answers
1.2k
views
2
answers
OMA error message
oma ortholog written 3.2 years ago by ni • 0
1
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0
answers
629
views
0
answers
OMA sequences with no Xs
oma written 3.4 years ago by dimar.gonzalez.soto • 0
2
votes
1
answer
831
views
1
answer
OMA warning about mapping to a clade
oma orthology written 3.6 years ago by amandinette • 20 • updated 3.6 years ago by adrian.altenhoff • 700
1
vote
2
answers
886
views
2
answers
OMA WARNING: took too long (>1200 sec) to find clusters
oma written 3.6 years ago by tauanajc • 0
7
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1
answer
1.1k
views
1
answer
How to find orthologs in both complete and fragmented genomes using OMA Standalone ?
orthologs oma esprit written 3.6 years ago by amandinette • 20 • updated 3.6 years ago by Christophe Dessimoz • 700
5
votes
1
answer
1.2k
views
1
answer
OMA current state and its updates
orthologs oma bacteria update written 3.6 years ago by natasha.sernova • 3.7k • updated 3.6 years ago by Christophe Dessimoz • 700
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