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4
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1
answer
612
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5 follow
1
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Bacterial known pathway - the easiest way to find and download 1:1 orthologs to each ferment involved
genome oma written 21 months ago by natasha.sernova • 3.6k • updated 21 months ago by adrian.altenhoff • 620
2
votes
2
answers
864
views
2
answers
usage of OMA on a HPC cluster with slurm
oma slurm written 21 months ago by Young • 0
0
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1
answer
655
views
1
answer
OMA: gene_function.gaf output file empty
oma written 23 months ago by lassancejm • 0 • updated 21 months ago by adrian.altenhoff • 620
0
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1
answer
708
views
1
answer
OMA Warning Unknown character U
orthologs oma written 22 months ago by pnatsidis • 0 • updated 22 months ago by natasha.sernova • 3.6k
1
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2
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724
views
2
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OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
orthologs oma written 2.7 years ago by linlinzhao.c • 0 • updated 22 months ago by andreag1987 • 0
1
vote
1
answer
665
views
1
answer
OMA - without all vs all
oma orthology written 22 months ago by dtejadamartinez • 20
3
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2
answers
935
views
2
answers
grid engine problem with OMA
cluster oma grid engine written 23 months ago by andrespara • 10 • updated 23 months ago by adrian.altenhoff • 620
2
votes
2
answers
620
views
2
answers
Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
orthologs oma written 23 months ago by robert.zimmermann • 10 • updated 23 months ago by david_emms • 60
0
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1
answer
695
views
1
answer
OMA standalone, "-c" to just convert the databases AFTER all vs all
oma written 23 months ago by gusa_10 • 0 • updated 23 months ago by adrian.altenhoff • 620
1
vote
2
answers
950
views
2
answers
Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster
oma written 24 months ago by gusa_10 • 0
2
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2
answers
877
views
2
answers
Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 24 months ago by jeremias.br • 10
0
votes
1
answer
674
views
1
answer
OMA -c option Bus error
oma written 24 months ago by gusa_10 • 0 • updated 24 months ago by adrian.altenhoff • 620
4
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1
answer
535
views
1
answer
IRI on sparql.omabroswer.org for fingerprint concept e.g. PATSWPL
oma sparql written 2.0 years ago by me • 690 • updated 2.0 years ago by tarcisiotmf • 30
0
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2
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933
views
2
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OMA error message
oma ortholog written 2.2 years ago by ni • 0
1
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0
answers
508
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0
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OMA sequences with no Xs
oma written 2.3 years ago by dimar.gonzalez.soto • 0
2
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1
answer
678
views
1
answer
OMA warning about mapping to a clade
oma orthology written 2.5 years ago by amandinette • 20 • updated 2.5 years ago by adrian.altenhoff • 620
1
vote
2
answers
721
views
2
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OMA WARNING: took too long (>1200 sec) to find clusters
oma written 2.5 years ago by tauanajc • 0
4
votes
1
answer
925
views
1
answer
How to find orthologs in both complete and fragmented genomes using OMA Standalone ?
orthologs oma esprit written 2.5 years ago by amandinette • 20 • updated 2.5 years ago by Christophe Dessimoz • 590
5
votes
1
answer
984
views
1
answer
OMA current state and its updates
orthologs oma bacteria update written 2.6 years ago by natasha.sernova • 3.6k • updated 2.5 years ago by Christophe Dessimoz • 590
0
votes
1
answer
825
views
1
answer
OMA Error code
oma written 2.7 years ago by rkskinner10 • 0 • updated 2.7 years ago by adrian.altenhoff • 620
1
vote
1
answer
894
views
1
answer
[OMA] When input sequence data are DNA, OMA conversion in AA ?
orthologs oma orthologous aa dna written 2.8 years ago by pourbiostars • 0 • updated 2.8 years ago by Christophe Dessimoz • 590
1
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2
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1.0k
views
2
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[OMA] If my jobs stop (SGE) will the results be conserved (AllvsAll) in the cache folder ?
orthologs oma written 2.9 years ago by pourbiostars • 0
0
votes
1
answer
935
views
1
answer
Is it possible to run the GETHOGs algorithm on already computed pairs of orthologs from OMA?
oma written 2.9 years ago by peter pfand • 80 • updated 2.9 years ago by Christophe Dessimoz • 590
0
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2
answers
1.2k
views
2
answers
OMA, GOdata/Wget error
orthologs oma godownload darwin written 3.0 years ago by protistologist • 0 • updated 3.0 years ago by adrian.altenhoff • 620
2
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0
answers
1.2k
views
0
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Tutorial: Building OMA database on SGE
oma tutorial written 3.3 years ago by javier.herrero • 10 • updated 3.3 years ago by genomax ♦ 73k
1
vote
1
answer
1.1k
views
1
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Error when running oma-standalone v1.0.6: Error, (in RangeOfChunk_iterator) sequence 2 is too long
orthologs oma written 3.4 years ago by javier.herrero • 10 • updated 3.4 years ago by adrian.altenhoff • 620
1
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2
answers
1.4k
views
2
answers
Error when running OMA on PBS with job array
orthologs parallelization oma pbs written 3.4 years ago by gonzalez.pech.ra • 0
2
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1
answer
1.3k
views
1
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OMA parameter error Message
parameter.drw cds oma multiple species written 3.4 years ago by chevivien • 70 • updated 3.4 years ago by adrian.altenhoff • 620
2
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1
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2.1k
views
1
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What's the best way to find out 1:1 ortholog presented in multiple speceis
oma ortholog written 3.4 years ago by yuanfeifuzzy • 0 • updated 3.4 years ago by Christophe Dessimoz • 590
3
votes
2
answers
880
views
2
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OMA error: Writing Part files to general cache area, not a specific dir
oma homology written 3.4 years ago by moranr • 250 • updated 3.4 years ago by adrian.altenhoff • 620
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