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3
votes
1
answer
417
views
1
answer
Error, 'Matches sp1/sp2 have been computed\ for different version
omastandalone oma written 23 months ago by dtejadamartinez • 20 • updated 23 months ago by adrian.altenhoff • 770
2
votes
0
answers
558
views
0
answers
OMA core dumped error in a single node/machine
oma orthology written 2.0 years ago by andrespara • 10 • updated 24 months ago by Biostar ♦♦ 20
1
vote
1
answer
620
views
1
answer
Best way running OMA using SLURM
oma slurm written 24 months ago by dimar.gonzalez.soto • 0 • updated 24 months ago by adrian.altenhoff • 770
0
votes
4
answers
586
views
4
answers
OMA cannot evaluate boolean
orthologs oma issue bug written 24 months ago by thomasbersez • 50
3
votes
1
answer
557
views
1
answer
Download cdna sequences from OMA
orthologs oma written 2.2 years ago by Biojl • 1.7k • updated 2.2 years ago by adrian.altenhoff • 770
1
vote
0
answers
596
views
0
answers
OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma written 2.3 years ago by johan.aranberg • 0
3
votes
1
answer
1.3k
views
1
answer
Is this warning fatal in OMA
orthologs oma written 4.9 years ago by moranr • 270 • updated 2.3 years ago by _r_am ♦ 32k
1
vote
0
answers
748
views
0
answers
OMA Standalone: "could not read the right number of characters"
oma oma standalone written 2.4 years ago by inactive account • 50
1
vote
1
answer
762
views
1
answer
OMA standalone error
genome software error oma orthologs written 2.5 years ago by pbravakos • 0 • updated 2.5 years ago by adrian.altenhoff • 770
1
vote
1
answer
601
views
1
answer
OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 2.5 years ago by anusblat • 0 • updated 2.5 years ago by Christophe Dessimoz • 700
4
votes
2
answers
828
views
2
answers
Trying to hack OMA to do specific All-v-All searches
orthologs oma written 2.5 years ago by jason.kwan • 0 • updated 2.5 years ago by Christophe Dessimoz • 700
1
vote
1
answer
674
views
1
answer
How export HOG viewer tree with orthologs in OMA
oma orthologs oma ortholog written 2.5 years ago by anusblat • 0 • updated 2.5 years ago by Christophe Dessimoz • 700
1
vote
0
answers
797
views
0
answers
Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.7 years ago by Solowars • 60
0
votes
1
answer
730
views
1
answer
OMA output does not match settings
oma orthologue written 2.9 years ago by ChrisM • 10 • updated 2.7 years ago by adrian.altenhoff • 770
0
votes
1
answer
741
views
1
answer
Error ruining OMA "OneMachineParallelInfo"
omastandalone oma written 2.8 years ago by dtejadamartinez • 20 • updated 2.7 years ago by adrian.altenhoff • 770
0
votes
0
answers
712
views
0
answers
how to resume an oma job using grid engine
oma gridengine engine oma-standalone grid written 2.8 years ago by dimar.gonzalez.soto • 0
0
votes
1
answer
745
views
1
answer
Gene List and Orthologs
orthologs oma e. coli written 2.9 years ago by shahroze786 • 0 • updated 2.9 years ago by GenoMax ♦ 94k
4
votes
1
answer
788
views
5 follow
1
answer
Bacterial known pathway - the easiest way to find and download 1:1 orthologs to each ferment involved
genome oma written 3.0 years ago by natasha.sernova • 3.8k • updated 3.0 years ago by adrian.altenhoff • 770
2
votes
2
answers
1.2k
views
2
answers
usage of OMA on a HPC cluster with slurm
oma slurm written 3.1 years ago by Yang • 0
0
votes
1
answer
892
views
1
answer
OMA: gene_function.gaf output file empty
oma written 3.2 years ago by lassancejm • 0 • updated 3.0 years ago by adrian.altenhoff • 770
0
votes
1
answer
963
views
1
answer
OMA Warning Unknown character U
orthologs oma written 3.1 years ago by pnatsidis • 0 • updated 3.1 years ago by natasha.sernova • 3.8k
1
vote
2
answers
893
views
2
answers
OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
orthologs oma written 3.9 years ago by linlinzhao.c • 0 • updated 3.1 years ago by andreag1987 • 0
1
vote
1
answer
955
views
1
answer
OMA - without all vs all
oma orthology written 3.1 years ago by dtejadamartinez • 20
2
votes
2
answers
771
views
2
answers
Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
orthologs oma written 3.2 years ago by robert.zimmermann • 10 • updated 3.2 years ago by david_emms • 110
0
votes
1
answer
961
views
1
answer
OMA standalone, "-c" to just convert the databases AFTER all vs all
oma written 3.2 years ago by gusa_10 • 0 • updated 3.2 years ago by adrian.altenhoff • 770
1
vote
2
answers
1.2k
views
2
answers
Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster
oma written 3.2 years ago by gusa_10 • 0
2
votes
2
answers
1.2k
views
2
answers
Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 3.3 years ago by jeremias.br • 10
0
votes
1
answer
872
views
1
answer
OMA -c option Bus error
oma written 3.3 years ago by gusa_10 • 0 • updated 3.2 years ago by adrian.altenhoff • 770
4
votes
1
answer
688
views
1
answer
IRI on sparql.omabroswer.org for fingerprint concept e.g. PATSWPL
oma sparql written 3.3 years ago by me • 730 • updated 3.3 years ago by tarcisiotmf • 30
0
votes
2
answers
1.2k
views
2
answers
OMA error message
oma ortholog written 3.5 years ago by ni • 0
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