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0
votes
1
answer
117
views
1
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OMA-standalone and sequence gaps
genome oma oma-standalone written 5 weeks ago by emmzarrr • 0
2
votes
0
answers
115
views
0
answers
OMA Standalone 2.4.2: cannot write to .oma directory
orthologs oma easybuild written 6 weeks ago by ed.eyles • 10
1
vote
1
answer
119
views
1
answer
Is OMA suitable for prediction of GO function in metagenomic datasets?
oma go_label written 10 weeks ago by crl111222 • 10 • updated 8 days ago by clement.train • 30
5
votes
0
answers
137
views
0
answers
Downloading all-against-all precomputed for any number of species returns 504 Gateway Time-out
oma error written 11 weeks ago by m3hdad • 10
12
votes
3
answers
225
views
6 follow
3
answers
Error running OMA standalone at HOG computation step
orthologs oma hog error written 12 weeks ago by gaurav.diwan • 20 • updated 11 weeks ago by adrian.altenhoff • 880
4
votes
1
answer
174
views
1
answer
Predicting Gene Ontology function in OMA for large datasets
gene_onthology oma omabrowser written 3 months ago by crl111222 • 10 • updated 3 months ago by adrian.altenhoff • 880
1
vote
0
answers
218
views
0
answers
Problem running OMA standalone
standalone oma omabrowser written 4 months ago by olbei.marton • 0
4
votes
1
answer
178
views
1
answer
OMA standalone estimating memory use for bacterial genomes
orthologs oma written 5 months ago by Andrew Watson • 40 • updated 5 months ago by adrian.altenhoff • 880
2
votes
0
answers
223
views
0
answers
OMA error: Gene ontology, darwin
oma written 6 months ago by di • 0
0
votes
1
answer
200
views
1
answer
Alignment scores thresholds with DNA
oma written 6 months ago by souzademedeiros • 0 • updated 6 months ago by adrian.altenhoff • 880
0
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0
answers
276
views
0
answers
oma -c error report
oma written 7 months ago by Sadie4444 • 0 • updated 7 months ago by zx8754 ♦ 9.9k
0
votes
0
answers
208
views
0
answers
oma -c killed
oma written 7 months ago by Sadie4444 • 0 • updated 7 months ago by Ram ♦ 32k
0
votes
1
answer
235
views
1
answer
can standalone OMA be used on protein fasta (not genome)
orthologs oma written 9 months ago by fyfes • 30 • updated 9 months ago by adrian.altenhoff • 880
0
votes
1
answer
225
views
1
answer
Clusters proteins at each taxonomic rank - OMA
oma clustering written 9 months ago by anusblat • 0 • updated 9 months ago by adrian.altenhoff • 880
1
vote
1
answer
233
views
1
answer
Error, 'sequence 1 is too long' OMA Standalone
oma written 10 months ago by carlosandrecds • 0 • updated 10 months ago by adrian.altenhoff • 880
1
vote
0
answers
537
views
0
answers
OMA not finding numpy; pip and wget failing
wget oma slurm numpy pip written 13 months ago by feander • 0
6
votes
1
answer
314
views
1
answer
Cannonical human sequence missing in OMA database?
software error R oma written 15 months ago by asente • 10 • updated 15 months ago by Christophe Dessimoz • 700
2
votes
1
answer
468
views
1
answer
Error in some hog codes using pyham
oma written 21 months ago by Biojl • 1.7k • updated 20 months ago by clement.train • 30
1
vote
1
answer
438
views
1
answer
Mismatch between gene IDs in Map-SeqNum-ID.txt and HierarchicalGroups.orthoxml
oma orthology pyham written 22 months ago by eschang1 • 10 • updated 22 months ago by adrian.altenhoff • 880
2
votes
1
answer
500
views
1
answer
Downloading genomes from OmaDB with PyOMADB or OMA API
orthologs oma written 22 months ago by hannah.muelbaier • 0 • updated 22 months ago by adrian.altenhoff • 880
2
votes
1
answer
453
views
1
answer
OMA browser: finding exact genome release information
orthologs genome oma orthology written 22 months ago by olbei.marton • 0 • updated 22 months ago by adrian.altenhoff • 880
2
votes
1
answer
515
views
1
answer
OMA gene vs splicing variants in the output
orthologs oma orthologs oma pyham written 22 months ago by mateusz.konczal • 0 • updated 22 months ago by adrian.altenhoff • 880
2
votes
1
answer
424
views
1
answer
OMA standalone has not listed splice variants used
oma written 22 months ago by nc52 • 10 • updated 22 months ago by adrian.altenhoff • 880
1
vote
1
answer
518
views
1
answer
OMA error in reading the all-against-all files
oma written 23 months ago by nc52 • 10 • updated 23 months ago by adrian.altenhoff • 880
2
votes
1
answer
482
views
1
answer
OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
orthologs oma orthology written 23 months ago by eschang1 • 10 • updated 23 months ago by adrian.altenhoff • 880
3
votes
1
answer
519
views
1
answer
Correct formatting for IDs in OMA standalone .splice files to properly identify splice variants
orthologs oma orthology written 23 months ago by eschang1 • 10
0
votes
1
answer
491
views
1
answer
Getting the highest taxonomy in the HOG database for a given OMA gene id
orthologs oma hog written 2.0 years ago by yogihooda88 • 10 • updated 2.0 years ago by Christophe Dessimoz • 700
5
votes
2
answers
664
views
2
answers
OMA error - download from gene ontology not working 404
orthologs oma written 2.0 years ago by nc52 • 10 • updated 2.0 years ago by Christophe Dessimoz • 700
3
votes
1
answer
429
views
1
answer
Error, 'Matches sp1/sp2 have been computed\ for different version
omastandalone oma written 2.0 years ago by dtejadamartinez • 20 • updated 2.0 years ago by adrian.altenhoff • 880
1
vote
1
answer
637
views
1
answer
Best way running OMA using SLURM
oma slurm written 2.1 years ago by dimar.gonzalez.soto • 0 • updated 2.1 years ago by adrian.altenhoff • 880
<prev • 92 results • page 1 of 4 • next >
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