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<prev • 92 results • page 1 of 4 • next >
12
votes
3
answers
225
views
6 follow
3
answers
Error running OMA standalone at HOG computation step
orthologs oma hog error written 12 weeks ago by gaurav.diwan • 20 • updated 11 weeks ago by adrian.altenhoff • 880
4
votes
1
answer
799
views
5 follow
1
answer
Bacterial known pathway - the easiest way to find and download 1:1 orthologs to each ferment involved
genome oma written 3.1 years ago by natasha.sernova • 3.8k • updated 3.1 years ago by adrian.altenhoff • 880
1
vote
2
answers
1.2k
views
2
answers
Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster
oma written 3.4 years ago by gusa_10 • 0
6
votes
2
answers
1.3k
views
2
answers
grid engine problem with OMA
cluster oma grid engine written 3.3 years ago by andrespara • 10 • updated 4 months ago by Biostar ♦♦ 20
1
vote
0
answers
815
views
0
answers
Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.8 years ago by Solowars • 60
4
votes
2
answers
848
views
2
answers
Trying to hack OMA to do specific All-v-All searches
orthologs oma written 2.6 years ago by jason.kwan • 0 • updated 2.6 years ago by Christophe Dessimoz • 700
1
vote
0
answers
762
views
0
answers
OMA Standalone: "could not read the right number of characters"
oma oma standalone written 2.5 years ago by inactive account • 50
2
votes
1
answer
468
views
1
answer
Error in some hog codes using pyham
oma written 21 months ago by Biojl • 1.7k • updated 20 months ago by clement.train • 30
1
vote
2
answers
904
views
2
answers
OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
orthologs oma written 4.1 years ago by linlinzhao.c • 0 • updated 3.2 years ago by andreag1987 • 0
5
votes
1
answer
1.2k
views
1
answer
OMA current state and its updates
orthologs oma bacteria update written 3.9 years ago by natasha.sernova • 3.8k • updated 3.9 years ago by Christophe Dessimoz • 700
7
votes
1
answer
1.2k
views
1
answer
How to find orthologs in both complete and fragmented genomes using OMA Standalone ?
orthologs oma esprit written 3.9 years ago by amandinette • 20 • updated 3.9 years ago by Christophe Dessimoz • 700
1
vote
2
answers
928
views
2
answers
OMA WARNING: took too long (>1200 sec) to find clusters
oma written 3.9 years ago by tauanajc • 0
2
votes
2
answers
784
views
2
answers
Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
orthologs oma written 3.3 years ago by robert.zimmermann • 10 • updated 3.3 years ago by david_emms • 110
1
vote
1
answer
975
views
1
answer
OMA - without all vs all
oma orthology written 3.3 years ago by dtejadamartinez • 20
0
votes
1
answer
975
views
1
answer
OMA Warning Unknown character U
orthologs oma written 3.2 years ago by pnatsidis • 0 • updated 3.2 years ago by natasha.sernova • 3.8k
2
votes
2
answers
1.2k
views
2
answers
usage of OMA on a HPC cluster with slurm
oma slurm written 3.2 years ago by Yang • 0
0
votes
1
answer
746
views
1
answer
OMA output does not match settings
oma orthologue written 3.1 years ago by ChrisM • 10 • updated 2.9 years ago by adrian.altenhoff • 880
0
votes
2
answers
886
views
2
answers
start OMA run - file.log
oma omabrowser written 3.0 years ago by dtejadamartinez • 20 • updated 17 months ago by Biostar ♦♦ 20
0
votes
0
answers
734
views
0
answers
how to resume an oma job using grid engine
oma gridengine engine oma-standalone grid written 2.9 years ago by dimar.gonzalez.soto • 0
0
votes
1
answer
760
views
1
answer
Error ruining OMA "OneMachineParallelInfo"
omastandalone oma written 2.9 years ago by dtejadamartinez • 20 • updated 2.9 years ago by adrian.altenhoff • 880
1
vote
1
answer
774
views
1
answer
OMA standalone error
genome software error oma orthologs written 2.6 years ago by pbravakos • 0 • updated 2.6 years ago by adrian.altenhoff • 880
3
votes
1
answer
576
views
1
answer
Download cdna sequences from OMA
orthologs oma written 2.3 years ago by Biojl • 1.7k • updated 2.3 years ago by adrian.altenhoff • 880
2
votes
0
answers
573
views
0
answers
OMA core dumped error in a single node/machine
oma orthology written 2.1 years ago by andrespara • 10 • updated 2.1 years ago by Biostar ♦♦ 20
1
vote
1
answer
637
views
1
answer
Best way running OMA using SLURM
oma slurm written 2.1 years ago by dimar.gonzalez.soto • 0 • updated 2.1 years ago by adrian.altenhoff • 880
5
votes
2
answers
664
views
2
answers
OMA error - download from gene ontology not working 404
orthologs oma written 2.0 years ago by nc52 • 10 • updated 2.0 years ago by Christophe Dessimoz • 700
2
votes
1
answer
482
views
1
answer
OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
orthologs oma orthology written 23 months ago by eschang1 • 10 • updated 23 months ago by adrian.altenhoff • 880
0
votes
0
answers
276
views
0
answers
oma -c error report
oma written 7 months ago by Sadie4444 • 0 • updated 7 months ago by zx8754 ♦ 9.9k
4
votes
1
answer
174
views
1
answer
Predicting Gene Ontology function in OMA for large datasets
gene_onthology oma omabrowser written 3 months ago by crl111222 • 10 • updated 3 months ago by adrian.altenhoff • 880
0
votes
1
answer
117
views
1
answer
OMA-standalone and sequence gaps
genome oma oma-standalone written 5 weeks ago by emmzarrr • 0
0
votes
1
answer
1.2k
views
1
answer
Is it possible to run the GETHOGs algorithm on already computed pairs of orthologs from OMA?
oma written 4.3 years ago by peter pfand • 100 • updated 4.2 years ago by Christophe Dessimoz • 700
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