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4
votes
1
answer
88
views
1
answer
Cannonical human sequence missing in OMA database?
software error R oma written 16 days ago by asente • 10 • updated 9 days ago by Christophe Dessimoz • 620
0
votes
2
answers
593
views
2
answers
start OMA run - file.log
oma omabrowser written 21 months ago by dtejadamartinez • 20 • updated 9 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
327
views
1
answer
Clarification of OMA tree metrics
orthologs oma species tree written 12 months ago by samche42 • 0 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
238
views
1
answer
Error in some hog codes using pyham
oma written 6 months ago by Biojl • 1.7k • updated 6 months ago by clement.train • 10
1
vote
1
answer
230
views
1
answer
Mismatch between gene IDs in Map-SeqNum-ID.txt and HierarchicalGroups.orthoxml
oma orthology pyham written 7 months ago by eschang1 • 10 • updated 7 months ago by adrian.altenhoff • 620
2
votes
1
answer
261
views
1
answer
Downloading genomes from OmaDB with PyOMADB or OMA API
orthologs oma written 7 months ago by hannah.muelbaier • 0 • updated 7 months ago by adrian.altenhoff • 620
2
votes
1
answer
211
views
1
answer
OMA standalone has not listed splice variants used
oma written 7 months ago by nc52 • 10 • updated 7 months ago by adrian.altenhoff • 620
2
votes
1
answer
266
views
1
answer
OMA gene vs splicing variants in the output
orthologs oma orthologs oma pyham written 7 months ago by mateusz.konczal • 0 • updated 7 months ago by adrian.altenhoff • 620
2
votes
1
answer
221
views
1
answer
OMA browser: finding exact genome release information
orthologs genome oma orthology written 7 months ago by olbei.marton • 0 • updated 7 months ago by adrian.altenhoff • 620
2
votes
1
answer
233
views
1
answer
OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
orthologs oma orthology written 8 months ago by eschang1 • 10 • updated 8 months ago by adrian.altenhoff • 620
1
vote
1
answer
271
views
1
answer
OMA error in reading the all-against-all files
oma written 8 months ago by nc52 • 10 • updated 8 months ago by adrian.altenhoff • 620
3
votes
1
answer
241
views
1
answer
Correct formatting for IDs in OMA standalone .splice files to properly identify splice variants
orthologs oma orthology written 8 months ago by eschang1 • 10
5
votes
2
answers
358
views
2
answers
OMA error - download from gene ontology not working 404
orthologs oma written 9 months ago by nc52 • 10 • updated 9 months ago by Christophe Dessimoz • 620
0
votes
1
answer
241
views
1
answer
Getting the highest taxonomy in the HOG database for a given OMA gene id
orthologs oma hog written 9 months ago by yogihooda88 • 10 • updated 9 months ago by Christophe Dessimoz • 620
3
votes
1
answer
230
views
1
answer
Error, 'Matches sp1/sp2 have been computed\ for different version
omastandalone oma written 10 months ago by dtejadamartinez • 20 • updated 10 months ago by adrian.altenhoff • 620
2
votes
0
answers
377
views
0
answers
OMA core dumped error in a single node/machine
oma orthology written 10 months ago by andrespara • 10 • updated 10 months ago by Biostar ♦♦ 20
1
vote
1
answer
340
views
1
answer
Best way running OMA using SLURM
oma slurm written 10 months ago by dimar.gonzalez.soto • 0 • updated 10 months ago by adrian.altenhoff • 620
0
votes
4
answers
333
views
4
answers
OMA cannot evaluate boolean
orthologs oma issue bug written 10 months ago by thomasbersez • 50
3
votes
1
answer
361
views
1
answer
Download cdna sequences from OMA
orthologs oma written 12 months ago by Biojl • 1.7k • updated 12 months ago by adrian.altenhoff • 620
1
vote
0
answers
356
views
0
answers
OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma written 14 months ago by johan.aranberg • 0
3
votes
1
answer
1.1k
views
1
answer
Is this warning fatal in OMA
orthologs oma written 3.8 years ago by moranr • 260 • updated 15 months ago by RamRS ♦ 25k
1
vote
0
answers
490
views
0
answers
OMA Standalone: "could not read the right number of characters"
oma oma standalone written 15 months ago by kirill.grigorev • 20
1
vote
1
answer
505
views
1
answer
OMA standalone error
genome software error oma orthologs written 16 months ago by pbravakos • 0 • updated 16 months ago by adrian.altenhoff • 620
1
vote
1
answer
395
views
1
answer
OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 16 months ago by anusblat • 0 • updated 16 months ago by Christophe Dessimoz • 620
4
votes
2
answers
573
views
2
answers
Trying to hack OMA to do specific All-v-All searches
orthologs oma written 16 months ago by jason.kwan • 0 • updated 16 months ago by Christophe Dessimoz • 620
1
vote
1
answer
402
views
1
answer
How export HOG viewer tree with orthologs in OMA
oma orthologs oma ortholog written 16 months ago by anusblat • 0 • updated 16 months ago by Christophe Dessimoz • 620
0
votes
0
answers
563
views
0
answers
Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 18 months ago by Solowars • 50
0
votes
1
answer
552
views
1
answer
OMA output does not match settings
oma orthologue written 22 months ago by ChrisM • 10 • updated 19 months ago by adrian.altenhoff • 620
0
votes
1
answer
543
views
1
answer
Error ruining OMA "OneMachineParallelInfo"
omastandalone oma written 20 months ago by dtejadamartinez • 20 • updated 19 months ago by adrian.altenhoff • 620
0
votes
0
answers
518
views
0
answers
how to resume an oma job using grid engine
oma gridengine engine oma-standalone grid written 20 months ago by dimar.gonzalez.soto • 0
<prev • 77 results • page 1 of 3 • next >
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