oma Posts

C: CWL: Getting output file of a CommandLineTool using glob by skanwal • 20
Thanks @inutano. It did the trick :)
C: How to perform differential gene expression analysis between two closely related by Vincent Laufer • 920
Although this does not address your initial question, I wanted to propose a downstream QC step th...
C: Convert (Copy Number Variation) CNV to gene by Vincent Laufer • 920
I agree with the comment above; i.e. we need to know what exactly you mean. Is what you want to s...
A: SOAP DENOVO outfile (.scafSeq) by h.mon ♦ 16k
`C some number` (e.g. C2943672) are singleton contigs, which could not be scaffolded. `scaffold s...
A: collapsing GFF coordinates with common start OR stop by h.mon ♦ 16k
First ensure your GFF is compliant with the specifications (see my comment above), then you can u...
C: Small RNAseq data with untrimmed reads left after trimming process by MAPK • 1.2k
Thanks, I checked those reads and there is 100% match with the genome. Any explanation for that?
C: Small RNAseq data with untrimmed reads left after trimming process by MAPK • 1.2k
As always, appreciate you answering my questions.
C: collapsing GFF coordinates with common start OR stop by h.mon ♦ 16k
> chr4 fBS CDS 5000 1000 - . PfamID1 > > chr4 fBS CDS 4000 1000 - . PfamID1 > > c...
A: Small RNAseq data with untrimmed reads left after trimming process by h.mon ♦ 16k
> Could it be possible for those reads to be pre-trimmed or come without 3' adapter justifying...
C: Small RNAseq data with untrimmed reads left after trimming process by genomax ♦ 52k
With small RNA seq if you are not able to identify the right adapter in your reads then it is lik...
C: Problem with Bedtools by alvarocentron91 • 0
Ok I want to know how many reads from the .bam overlap with each of the positions I have on my .g...
C: Problem with Bedtools by h.mon ♦ 16k
Regarding the error message posted as an image (which should be avoided, it is better to copy / p...

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