oma Posts

A: RNA-seq software for single and multiple replicated data by jared.andrews07 ♦ 5.0k
Differential gene expression analysis between single samples is meaningless. You **need** replica...
A: Question about pairwise2 in Biopython by KHP • 0
Looks like it was the position of the append arguments that was the problem! The two append funct...
C: GSEA preranking metric for RNA Seq by Kevin Blighe ♦ 55k
Rank by fold-change.
C: GSEA preranking metric for RNA Seq by asalimih • 20
what would be your answer if the question was about the GSEA program of Broad Institute?
A: samtools mpileup - how to extract the alternative allele counts for *each* alter by Ks-seq • 0
If I can ask: How get Allele fraction= reads supporting a variant (AD) / total reads (DP) ? and...
A: TPM to concentration by mhockin • 560
The above answers are technically correct in highlighting the many ways in which this answer migh...
A: 'find_gene_modules' error in the Monocle 3 tutorial by vHelmholtz • 20
The code works. There is no error. By mistake, I skipped running the previous code. Sorry for the...
A: deeptools plotProfile plots inconsistently by colin.kern • 850
The clustering can be different each time with kmeans if the initial cluster centroids are chosen...
C: How to creat a GRangesList object from TCGA CNV data by pyhgzzj • 0
I want to calculate the CINdex of LIHC using TCGA data
C: How to creat a GRangesList object from TCGA CNV data by pyhgzzj • 0
I want to calculate the CINdex of TCGA LIHC
C: How to blastn a very short query sequence? Identifying telomeres in assembly by Alex Reynolds ♦ 29k
Hi Carlo, if you have a moment, please consider upvoting and/or marking this answer as accepted. ...
C: How to Bedtools intersect two different sorted BED files by caro-ca • 0
Thank you for your help and time! It worked.

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