oma Posts

C: denovo assembly using soap denovo by a4appy23 • 10
yes i tried with k31 and k51 and chose k51 because it gave higher contigs compared to k31. but in...
C: How can I extract all the GCA_0000000. from bac120.tree? by anran04100 • 0
Sorry. I will pay more attention to this the next time. I have solved this problem. Thank you any...
C: How to create alternate reference for SNPs? by genomax ♦ 91k
If you have the reference then `mutate.sh` from BBMap suite can introduce mutations that you cont...
A: multiple processing with single .bam file gonna make problems?? by genomax ♦ 91k
> is it OK to run other process (Delly for SV calling) with bam files > that already being ...
A: what is the deal with bioconda? by genomax ♦ 91k
Make sure the order of channels is as follows. conda config --add channels defaults con...
A: multiple processing with single .bam file gonna make problems?? by anfor • 0
hi, Work on copy or have a look at data versioning systems like pins (R package) ... best A
C: BioMart: connection fails by kathka • 0
Since I often land on this answer (by the will of Google), whenever I look through my colleague's...
C: How to run DESeq2 for multiple factors by dsull • 1.6k
Let's start with one problem at a time, and get things working with one factor first. In general...
C: about blast2go problem by sgoetz123 • 20
All these Blast2GO features and more are now available via OmicsBox from https://www.biobam.com/o...
C: extract a DNA sequence based on header in multifasta file by Optimist • 90
Thanks for the trick. awk has worked for me.
C: extract a DNA sequence based on header in multifasta file by cpad0112 ♦ 14k
Try: $ awk '$0 ~ /^>16S_rRNA/ {getline seq; print $0,seq}' test.fa $ sed -n '/^>16...
C: Looping over list in R by rodolfo.peacewalker • 0
rpolicastro, thanks for your help. The map function worked well! Now I have an issue related with...

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