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Recent Votes
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- A: -m option of HTSeq in featureCounts
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Recent Replies
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A: Generating genesets matched for GC content and length by
Houyu Zhang • 20
Do you mean the generated dataset must be genes? If so, consider the gene length differs, you c...
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C: -m option of HTSeq in featureCounts by
morteza.aslanzadeh • 10
Thank you for the comment. With that being said, I go with the default version of alignment mode ...
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C: how to filter microbial genome based on quality score by
Bioinfonext • 220
Thanks @genomax, now it is working well without -hmm flag.
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C: Finding Unique genes in Roary output by
elkassah96 • 0
Thank you very much for your comment i used the two commands you wrote and i used gene_presence...
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A: How to generate random genomic sequences that are GC- and length-matched to my i by
Houyu Zhang • 20
I wrote a pure bash script for this purpose, verbose but useful. Wish to see better versions :) ...
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C: Counting single-cell ATAC fragments at peaks on BED file by
Nico • 0
Hi, thanks a lot, that is exactly what I was looking for. I actually used Signac before but was u...
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C: plink2 bgen to vcf ukbiobank by
Shicheng Guo • 8.3k
how large it is for ukb_imp_chr21_v3.bgen?
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C: Understanding BEDtools summary output by
geek_y ♦ 11k
What is this program ? Can you add a link ? like a download page or something ?
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C: Counting single-cell ATAC fragments at peaks on BED file by
geek_y ♦ 11k
In scATAC, there is no bam file per cell. Its barcode based. FeatureCounts needs individual bam f...
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A: Counting single-cell ATAC fragments at peaks on BED file by
geek_y ♦ 11k
I am not sure if you have looked up for any tools for scATAC analysis. [Signac][1], part of Seura...
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C: Extracting Genes that contribute to 1st PC by
Kevin Blighe ♦ 61k
He is referring [I think] to the component / variable loadings. I am not sure that WGCNA supports...
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C: Extracting Genes that contribute to 1st PC by
reara • 0
> The Principle Components analysis must have the genes factors, and you'd have to pick out th...
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