oma Posts

C: How to run the ViennaRNA package by jrj.healey ♦ 10k
My advice would be download Conda and install it from the relevant channel. Pretty sure I did thi...
A: Convert Fasta format to MEME-motif format by kashifalikhan007 • 40
Follow these steps: - Generate background files by: fasta-get-markov - Use iupac2meme to gene...
C: Multiple sequence alignment and visualisation for bacterial genomes by jrj.healey ♦ 10k
There is no such tool that can manage this. Genome scale MSAs at the exact nucleotide level just ...
C: HMM and NGS mapping by Devon Ryan ♦ 88k
Do you have access to the homologous sequences themselves? It'd be simple enough to just align to...
A: Is There Is Tool For Variable Tandem Repeats Finding? by Sukhdeep Singh ♦ 9.6k
Also, check out [MISA][1] Beier S, Thiel T, Münch T, Scholz U, Mascher M (2017) MISA-web: a web ...
C: Extraction of aligned read using samtools by ATpoint ♦ 13k
Please use the search function, this question has been asked very often before. File size is not ...
C: Recurrent mutation query by ATpoint ♦ 13k
Does your analysis has any biological relevance, so any analysis on the mutation that further cha...
C: Many 0 in ped file converted from vcf genomic data by ATpoint ♦ 13k
Please use the formatting bar (`10101`) to highlight code and data examples.
C: Number of discovered genes in genome does not correspond with published annotati by P16226 • 0
Thank you very much! You are right!
C: MyCC not producing any bins by Kevin Blighe ♦ 37k
...and what does that log file state? Look for warning and/or error messages.
A: MyCC not producing any bins by suran.nambisan • 0
Hi All I have used MyCC.py but am not able to get any output except the log file. MyCC.py mg_s...
A: Filtering number of markers after segmentation using DNAcopy by Eric T. • 2.3k
Is this for research or for clinical diagnostics? Did the source data come from array CGH, SNP ar...

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