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Techniques for finding tumor purity from Oncomine panel?

heterogeneity oncomine oncology purity written 5 months ago by taylor.falk3 • 0

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Job: DIRECTOR of COMPUTATIONAL BIOLOGY, Cedilla Therapeutics, Cambridge, MA, USA

crispr high throughput sequencing job oncology written 10 months ago by tnicholson • 10 • updated 10 months ago by genomax ♦ 64k

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312

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News: 3rd World Conference on Breast and Cervical Cancer

news cervical cancer oncology breast cancer written 11 months ago by brececan2018 • 0 • updated 11 months ago by RamRS ♦ 20k

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747

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Job: Cancer Bioinformatics Scientist Position @ LifeBytes, India

next-gen oncology cancer job ngs bioinformatics written 12 months ago by lifebytesbio • 0

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585

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Which type of cancer over-expressed my genes

expression oncology target written 2.2 years ago by bzhtgb • 10

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Job: Senior Research Investigator Position at BMS Next Generation Sequencing

next-gen biomarkers job oncology rna-seq written 2.9 years ago by stefan.kirov • 0

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1.3k

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Job: Open Position: Scientist, Computational Biology, Immuno-Oncology -- FLX Bio, South San Francisco

immunology jobs oncology san francisco written 3.4 years ago by gc • 20

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1.2k

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Job: Bioinformatics position at University of Bologna

bioinformatics ngs fellow job oncology written 3.5 years ago by valentina • 60

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Job: Senior Database Developer/System Administrator, Dept. of Oncology, University of Oxford, UK

database linux job oncology cancer written 3.7 years ago by kilo.morkowi • 70

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Job: Research Scientist/Postdoctoral fellow in cancer genomics (Goethe-University Medical School, Frankfurt, Germany)

ngs job oncology cancer written 4.3 years ago by icg • 0

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Job: Oncology Variant Scientist, Redwood City, CA, USA

ngs clinical geneticists job oncology scientist written 4.6 years ago by danelle.blondin • 50 • updated 4.6 years ago by Devon Ryan ♦ 88k

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Autobiographer to Manoj Yarramsetti • 0
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Recent Replies

A: Extract allele count from gnomAD using R by zx8754 ♦ 6.8k
Not API, but maybe this bioconductor package - [MafDb.gnomAD.r2.0.1.GRCh38](http://bioconductor.o...
C: How to cluster drugs by up/down gene lists? by Antony • 0
I now have the complete gene list and I am taking the approach of +1 (up), 0 (missing), -1 (down)...
C: About the ERCC spike-in sequence reads quantification by michael.ante • 3.2k
But the fasta-header names are the same as you used in the gtf? The output of `samtools view -c...
C: Two genes in one SNP by cpad0112 ♦ 11k
Check dbSNP (rs) versions. There seems to be some change between the versions. https://www.biosta...
C: Tools To Do the Alternative Splicing Analysis by chris86 • 240
Kristoffer, can I ask why you don't mention Sleuth and Ballgown which, as far as I understand, we...
C: About the ERCC spike-in sequence reads quantification by younglin113 • 10
Because the spike-in sequences I used is not exactly the Thermofisher version. And the gtf file I...
C: Weighted sequence logos and motifs by ATpoint ♦ 14k
tools that would take into account the sequence scores Neither of the linked tools does. The...
C: Question in RNA-Seq gene expression profiling by ATpoint ♦ 14k
This workflow is quiet old. FPKM normalization has repetitively been shown to be non-reliable for...
C: Bedtools Genomecoveragebed Usage : How To Create A Genome File? by Carambakaracho • 930
Thanks, though newer versions of many bedtools seem generally more forgiving with regard to the `...
C: Orthomcl install schema error by ATpoint ♦ 14k
conda install -c bioconda orthomcl
C: Research design on "Animal Genetics and Breeding", using online bioinformatics t by ATpoint ♦ 14k
I think this is exactly how one should **not** plan a study. One should instead first raise a sci...
C: Addition of Y chromosome to the ref sequence by micro32uvas • 10
What I dont get, is that the providers of the ref seq, (NCBI and Bovine database) have not given ...

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