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Blog: Bioinformatics for Precision Oncology - Online Bioinformatics Training Program

bioinformatics blog rna-seq oncology cancer written 7 weeks ago by elia.brodsky • 320

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280

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Techniques for finding tumor purity from Oncomine panel?

heterogeneity oncomine oncology purity written 9 months ago by taylor.falk3 • 0

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Job: DIRECTOR of COMPUTATIONAL BIOLOGY, Cedilla Therapeutics, Cambridge, MA, USA

crispr high throughput sequencing job oncology written 14 months ago by tnicholson • 10 • updated 14 months ago by genomax ♦ 69k

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News: 3rd World Conference on Breast and Cervical Cancer

news cervical cancer oncology breast cancer written 15 months ago by brececan2018 • 0 • updated 15 months ago by RamRS ♦ 22k

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Job: Cancer Bioinformatics Scientist Position @ LifeBytes, India

next-gen oncology cancer job ngs bioinformatics written 16 months ago by lifebytesbio • 0

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631

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Which type of cancer over-expressed my genes

expression oncology target written 2.5 years ago by bzhtgb • 10

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Job: Senior Research Investigator Position at BMS Next Generation Sequencing

next-gen biomarkers job oncology rna-seq written 3.2 years ago by stefan.kirov • 0

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Job: Open Position: Scientist, Computational Biology, Immuno-Oncology -- FLX Bio, South San Francisco

immunology jobs oncology san francisco written 3.7 years ago by gc • 20

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Job: Bioinformatics position at University of Bologna

bioinformatics ngs fellow job oncology written 3.8 years ago by valentina • 60

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Job: Senior Database Developer/System Administrator, Dept. of Oncology, University of Oxford, UK

database linux job oncology cancer written 4.0 years ago by kilo.morkowi • 70

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Job: Research Scientist/Postdoctoral fellow in cancer genomics (Goethe-University Medical School, Frankfurt, Germany)

ngs job oncology cancer written 4.7 years ago by icg • 0

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Job: Oncology Variant Scientist, Redwood City, CA, USA

ngs clinical geneticists job oncology scientist written 4.9 years ago by danelle.blondin • 50 • updated 4.9 years ago by Devon Ryan ♦ 91k

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Recent Replies

C: Effect size in power analysis when dealing with Poisson based variant caller by CY • 370
I will have to give up detecting somatic variant with very low frequency (<1%) since matched n...
C: The Cancer Genome Atlas (TCGA) gene expression analysis by lovely.molbio • 0
Thank you for your response. No, I have not downloaded any data from TCGA, yet. I have used Broad...
A: Effect size in power analysis when dealing with Poisson based variant caller by markus.riester • 470
Such a power calculation is described in [Carter el al][1]. You can find a well documented implem...
C: Edge weights on network propagation by mutation location by Kevin Blighe ♦ 45k
I believe you will have to encode this yourself. With *igraph* (R Programming Language), you can ...
A: DiffBind package showing warnings and unable to analyse my data by Rory Stark • 510
What are the sample groups that you are trying to find the difference between? If all four sample...
C: Effect size in power analysis when dealing with Poisson based variant caller by Kevin Blighe ♦ 45k
Yeh, but, a somatic mutation / variant at which frequency? Technically speaking, in a bulk biopsy...
C: help with pindel2vcf by Kevin Blighe ♦ 45k
That is a [common] warning message. Do you know if duphold requires the PL tag?
C: How to get gene annotation for a list of genes by RamRS ♦ 22k
I'm assuming these are human genes. You can use various R packages to get these data dimensions ...
A: Whats the Difference between variants and SNPs in IGV?(or in general) by RamRS ♦ 22k
There are quite a few terms used to describe nucleotide changes between a reference sequence and ...
A: Regression using genotype on expression of genes by Kevin Blighe ♦ 45k
I am not sure what you are aiming to do, exactly. However, you should attempt to get your VCF dat...
C: What kind of Affymetrix SNP 6.0 datafile is this? by Kevin Blighe ♦ 45k
Thanks for the link. I can see ( here ) that they processed the copy number data using Partek Gen...
C: What kind of Affymetrix SNP 6.0 datafile is this? by andorjkiss • 10
Sure, it's from the Osteosarcoma public data set at TARGET: https://ocg.cancer.gov/programs/targe...

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