0
votes
1
reply
166
views
0
votes
1
reply
184
views
updated 5 days ago by
Pierre Lindenbaum
154k
•
written 5 days ago by
Alewa
▴
110
0
votes
2
replies
194
views
5 days ago by
optimistsso4co3
▴
100
0
votes
0
replies
115
views
5 days ago by
langziv
▴
20
1
vote
2
replies
2.0k
views
updated 5 days ago by
barslmn
★
1.5k
•
written 5.6 years ago by
shrutishreyajha
▴
10
1
vote
3
replies
328
views
0
votes
0
replies
161
views
6 days ago by
Will Yam
▴
30
0
votes
0
replies
537
views
0
votes
1
reply
250
views
updated 6 days ago by
Pierre Lindenbaum
154k
•
written 6 days ago by
eshrakaali_p
•
0
1
vote
5
replies
487
views
4 days ago by
Francois Piumi
▴
30
3
votes
1
reply
252
views
6 days ago by
Zi
•
0
0
votes
1
reply
243
views
0
votes
1
reply
237
views
0
votes
0
replies
186
views
0
votes
2
replies
346
views
0
votes
0
replies
189
views
7 days ago by
ali.kian.saei
▴
10
0
votes
0
replies
200
views
7 days ago by
Hendricks27
•
0
0
votes
1
reply
321
views
1
vote
3
replies
345
views
updated 4 days ago by
Ram
39k
•
written 8 days ago by
JULIA HELENA
•
0
0
votes
0
replies
178
views
0
votes
0
replies
186
views
0
votes
0
replies
195
views
8 days ago by
Rajendra KC
▴
20
0
votes
0
replies
165
views
4
votes
6
replies
508
views
updated 5 days ago by
Buffo
★
2.2k
•
written 8 days ago by
Anderson Stiward
•
0
2
votes
0
replies
209
views
8 days ago by
garbagelister
▴
20
0
votes
0
replies
186
views
8 days ago by
Denis
▴
270
0
votes
0
replies
169
views
2
votes
6
replies
516
views
0
votes
0
replies
201
views
0
votes
3
replies
337
views
0
votes
0
replies
203
views
7
votes
12
replies
811
views
6
votes
6
replies
526
views
updated 8 days ago by
ATpoint
72k
•
written 9 days ago by
kalavattam
▴
120
0
votes
0
replies
191
views
9 days ago by
Camilo Andres
▴
30
1
vote
1
reply
188
views
2
votes
2
replies
288
views
2
votes
1
reply
249
views
1
vote
2
replies
220
views
9 days ago by
Prangan
▴
20
0
votes
0
replies
186
views
3
votes
9
replies
490
views
0
votes
0
replies
168
views
10 days ago by
harish
•
0
3
votes
4
replies
2.4k
views
updated 10 days ago by
Ram
39k
•
written 2.2 years ago by
roybatty269
•
0
0
votes
1
reply
173
views
0
votes
0
replies
112
views
0
votes
0
replies
127
views
0
votes
0
replies
144
views
0
votes
0
replies
105
views
updated 10 days ago by
Ram
39k
•
written 10 days ago by
Pouria.momayyezi
•
0
0
votes
2
replies
225
views
updated 10 days ago by
WouterDeCoster
47k
•
written 10 days ago by
Link
•
0
0
votes
0
replies
110
views
0
votes
1
reply
220
views
Recent Votes
Recent Locations •
All
United States, 1 minute ago
United States, 5 minutes ago
United States, 5 minutes ago
Texas, United States, 9 minutes ago
Moscow, 13 minutes ago
Cambridge, MA, 13 minutes ago
United States, 14 minutes ago
Recent Awards •
All
Popular Question to
Sam
▴
150
Commentator to
Gordon Smyth
★
6.1k
Popular Question to
Vincent Laufer
★
2.8k
Popular Question to
beausoleilmo
▴
530
Popular Question to
rbaranikumar
•
0
Recent Replies
Answer: Single cell chemistry
by
swbarnes2
13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data?
by
Vincent Laufer
★
2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
by
Dhatri Badri
•
0
that didn't work either
Answer: Why are some WES VCFs larger than others?
by
Vincent Laufer
★
2.8k
Hi @kermit and prash (and others)!
Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
by
WouterDeCoster
47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
by
Dhatri Badri
•
0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data
by
andres.firrincieli
3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
by
Pierre Lindenbaum
154k
> fastq.gz".
what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam
by
Pierre Lindenbaum
154k
1) I think this is just a warning
2) there must be another error displayed
3) look at samtools view --subsample
4) don't use loops but use…
Comment: ABySS genome assembler
by
npavliukovec
•
0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS
by
yuxiang
•
0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS
by
yuxiang
•
0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference
by
samuel.a.odonnell
▴
470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler
by
GenoMax
129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
Comment: Single cell chemistry
by
GenoMax
129k
> I did it with cellRanger count and it went fine with good results
It is not clear if you are referring to some other samples that worked…
Traffic: 1140 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6