Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
2 of 20
Sort: replies
Rank
Views
Votes
Replies
16
votes
21
replies
1.9k
views
Why there are different hit for a same gene in different species
gene
blast
ortholog
paralog
7.2 years ago by
Farbod
★ 3.4k
22
votes
20
replies
2.3k
views
what is the prefered strategy to treat with blast-less transcriptomes from RNA-seq
blast
RNA-Seq
genome
gene
updated 7 months ago by
Ram
41k • written 7.4 years ago by
Farbod
★ 3.4k
2
votes
20
replies
1.8k
views
The number of SVs called by `vg call` is much smaller than the number of SVs in the VCF used to construct the graph
vg
12 weeks ago by
Maxine
▴ 40
8
votes
20
replies
2.4k
views
Getting read depth for normal and tumour
R
WGS
vcf
4.7 years ago by
fi1d18
★ 4.2k
5
votes
20
replies
3.8k
views
DiscoSnp Segmentation fault
snp
discosnp
updated 14 months ago by
Ram
41k • written 8.3 years ago by
Hans
▴ 140
9
votes
20
replies
3.8k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 8 months ago by
Ram
41k • written 5.3 years ago by
marongiu.luigi
▴ 690
0
votes
20
replies
1.3k
views
Rockhoppper - Suspiciously low percentage of perfectly aligned reads
Rockhopper
RNA-seq
6 weeks ago by
langziv
▴ 50
6
votes
20
replies
6.1k
views
filling of missing genotype information in merged variant call vcf file
SNP
5.5 years ago by
princy149
▴ 80
5
votes
20
replies
8.0k
views
How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
ChIP-Seq
homer
7.3 years ago by
varsha619
▴ 90
4
votes
20
replies
1.6k
views
How can I count aminoacid residues from a HUGE compressed fasta file?
sequence
3.9 years ago by
schlogl
▴ 160
8
votes
20
replies
2.7k
views
Why does cufflinks split this transcript?
RNA-Seq
cufflinks
assembly
5.9 years ago by
corend
▴ 70
8
votes
20
replies
2.2k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 18 months ago by
Ram
41k • written 5.4 years ago by
Bara'a
▴ 270
6
votes
19
replies
2.6k
views
Clustering for Single-cell RNA-seq Data
clustering
R
single-cell
4.3 years ago by
aloke205
▴ 40
3
votes
19
replies
1.1k
views
Systematic errors at the end and beginning of reads in NGS panels
NGS
error
panels
sequencing
updated 5 months ago by
Asaf
10k • written 5 months ago by
captainlabman
▴ 10
1
vote
19
replies
1.9k
views
High no feature counts in ht-seq counts
RNA-Seq
sequencing
5.0 years ago by
eozcan
▴ 10
10
votes
19
replies
3.0k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.5 years ago by
GenoMax
136k • written 2.6 years ago by
matt
▴ 20
1
vote
19
replies
6.5k
views
Conda install package - different internals
R
software error
updated 4.3 years ago by
Biostar
20 • written 4.3 years ago by
lihe.liu
▴ 30
6
votes
19
replies
1.5k
views
Fastq header modification
sequence
next-gen
updated 5.7 years ago by
Ram
41k • written 5.7 years ago by
Guillaume
• 0
4
votes
19
replies
2.9k
views
Use machine learning as classifier
R
rRNA
16S
18S
ITS
updated 6.2 years ago by
Biostar
20 • written 6.4 years ago by
cool.abbecker
▴ 30
7
votes
19
replies
6.7k
views
[R] Microarray analysis interpreting logFC after makeContrasts
microarray
R
updated 22 months ago by
Ram
41k • written 9.1 years ago by
mheiser1
▴ 10
15
votes
19
replies
1.7k
views
trimmomaric command for a fasta file?
trimmomatic
updated 5.6 years ago by
Ram
41k • written 5.6 years ago by
Nadin.asal
• 0
0
votes
19
replies
1.2k
views
map fasts files
RNA-Seq
FASTQ
R
5.8 years ago by
Learner
▴ 270
0
votes
19
replies
1.3k
views
best blast strategy: read vs cluster?
alignment
blast
search
strategy
4.0 years ago by
marongiu.luigi
▴ 690
7
votes
19
replies
2.7k
views
mapping script process sleeping on server.
alignment
updated 18 months ago by
Ram
41k • written 8.7 years ago by
lvogel
▴ 30
3
votes
19
replies
5.6k
views
gatk-launch file missing
next-gen
sequencing
software error
updated 4.6 years ago by
finswimmer
16k • written 4.6 years ago by
sruthi
▴ 40
17
votes
19
replies
2.5k
views
Sorting sequences according header
software error
sequence
Assembly
next-gen
7.3 years ago by
Gian77
▴ 60
22
votes
19
replies
2.9k
views
targets of a list of miRNAs
miRNAs
RNA-Seq
DEanalysis
target-prediction
7.1 years ago by
fi1d18
★ 4.2k
13
votes
19
replies
5.0k
views
bbmerge not joining paired-end reads
bbmerge
alignment
6.0 years ago by
bioplanet
▴ 60
0
votes
19
replies
9.1k
views
Skip orientation as there are not enough pairs by bwa mem
whole genome
bwa
paired end sequencing
4.5 years ago by
seta
★ 1.8k
5
votes
19
replies
1.6k
views
how I can come up with a permanent error
R
software error
6.6 years ago by
fi1d18
★ 4.2k
18
votes
19
replies
2.0k
views
6 follow
Extremely important marker gene has many reads based on IGV viewer but no quantified reads
rna-seq
sequencing
igv
alignment
next-gen
updated 12 months ago by
Ram
41k • written 4.9 years ago by
rbkh09
• 0
0
votes
19
replies
2.5k
views
error related to vcfstats
numpy
snp
vcf
vcfstats
2.3 years ago by
rheab1230
▴ 140
0
votes
19
replies
1.7k
views
scatterplot in R
microarray
expression
gene
updated 14 months ago by
Ram
41k • written 14 months ago by
bioinformatics
▴ 20
9
votes
19
replies
2.0k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
3.9 years ago by
schlogl
▴ 160
0
votes
19
replies
3.6k
views
Difficulty installing GATKtoolkit
GATK
Variant calling
SNPs
Indels
5.9 years ago by
jaqx008
▴ 110
2
votes
18
replies
5.8k
views
No differentially expressed genes using DESeq2
RNA-Seq
deseq2
7.0 years ago by
Sumit Paliwal
▴ 40
3
votes
18
replies
2.7k
views
Help creating Deseq2 count matrix from separate files
or
Sample
matrix
updated 2.4 years ago by
Ram
41k • written 2.4 years ago by
Nai
▴ 50
14
votes
18
replies
4.6k
views
GATK Haplotype Caller
next-gen
GATK
haplotype
caller
contigs
updated 6.9 years ago by
Biostar
20 • written 7.1 years ago by
plink_9857
▴ 50
0
votes
18
replies
1.6k
views
freebayes error variant calling
snp
3.3 years ago by
evelyn
▴ 220
5
votes
18
replies
6.1k
views
EnhancedVolcano plot error: Log2foldchange is not numeric!
R
EnhancedVolcano
4.0 years ago by
michelle.piquet
▴ 60
3
votes
18
replies
1.5k
views
6 follow
What sequencing/alignment artifact is this?
variants
mutect
sequencing
alignment
mitochondria
13 months ago by
lacb
▴ 120
7
votes
18
replies
4.6k
views
Fold change UP and Down in dplyr calculation
R
6.3 years ago by
1769mkc
★ 1.1k
2
votes
18
replies
2.3k
views
Bwa on multiple processor
np
mpirun
bwa
alignment
23 months ago by
shivangi.agarwal800
▴ 120
0
votes
18
replies
1.3k
views
bcl2fastq conversion with specifying exact match of indices
genome
RNA-Seq
sequencing
updated 3 months ago by
GenoMax
136k • written 3 months ago by
Apex92
▴ 280
0
votes
18
replies
1.3k
views
No gene name after annovar vcf file processing
vcf
annovar
4.1 years ago by
valerie
▴ 100
4
votes
18
replies
3.8k
views
Significance of reads mapping to Viruses - FusionCatcher
RNA-Seq
virus
reads
fusion
updated 15 months ago by
Ram
41k • written 8.0 years ago by
Joel TM
▴ 60
1
vote
18
replies
2.4k
views
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez
eutils
7.3 years ago by
Tom
▴ 40
4
votes
18
replies
15k
views
Alignment with BWA and SAMtools
BWA
SAM-file
SAMtools
updated 3.1 years ago by
Biostar
20 • written 5.3 years ago by
Shelle
▴ 30
1
vote
18
replies
1.5k
views
Find tissues that are functionally related
tissue
functionally-related
gene-expression
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
Natasha
▴ 40
16
votes
18
replies
5.0k
views
8 follow
Python Program to read .fasta file to .txt file
Python
updated 4.3 years ago by
Mensur Dlakic
★ 25k • written 4.3 years ago by
tikshyadav19
• 0
1,000 results • Page
2 of 20
Recent Votes
Answer: Should I scale all genes in single cell Seurat?
Answer: Should I scale all genes in single cell Seurat?
Answer: Should I scale all genes in single cell Seurat?
Answer: Problematic fastq files...How can we trust them?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Recent Locations •
All
Thailand,
1 minute ago
Cambridge, MA,
2 minutes ago
Stony Brook University, NY,
2 minutes ago
India,
2 minutes ago
United States,
2 minutes ago
USA,
3 minutes ago
Washington University School of Medicine, St. Louis, USA,
3 minutes ago
Recent Awards •
All
Popular Question
to
Malachi Griffith
19k
Scholar
to
jared.andrews07
★ 16k
Teacher
to
4galaxy77
2.8k
Popular Question
to
DR
▴ 10
Commentator
to
Devon Ryan
104k
Teacher
to
i.sudbery
18k
Popular Question
to
gernophil
▴ 40
Recent Replies
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands?
by
Malachi Griffith
19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ?
by
Trivas
★ 1.5k
You added a position dodge on your boxplot but not on your points.
Comment: How Can I move the scattered dots more closer into the center of box ?
by
ATpoint
78k
Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
Comment: Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates with
by
jucosie
• 0
Hello, I am reviewing some old scripts in which I used clumpify.sh (BBMap 38.90) with the following parameters: ./clumpify.sh in1=$dir_c…
Comment: Problematic fastq files...How can we trust them?
by
Istvan Albert
99k
perhaps ask her about the origin of the data, how was the data postprocessed FASTQ data is a bit more resilient than other types of data a…
Answer: GO categorization
by
Istvan Albert
99k
If you have an organism that lacks the GO to gene mapping then you have to find a way to assign these terms to your genes. Basically your …
Comment: doubt about usage of megahit
by
Istvan Albert
99k
you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes …
Comment: Problematic fastq files...How can we trust them?
by
ATpoint
78k
Then tell her to bring proper data. In the lab you also don't use buffers with mold growing in it, and in bioinformatics we don't start wit…
Comment: Problematic fastq files...How can we trust them?
by
blackadder
▴ 30
Its not my data. An external researcher is visiting and she wanted from us to do some bioinformatics... The samples were not sequenced by u…
Comment: Tools or R / Python packages to perfom ML models
by
sil_bioinfo
▴ 30
Oh, I understand. Thank you so much for your help! The truth is that there is so much information, so many packages, libraries, tutorials,…
Comment: Tools or R / Python packages to perfom ML models
by
Matthias Zepper
4.2k
Just to clarify: Many ML models are trained and executed using dedicated software libraries for machine learning and artificial intellige…
Answer: Problematic fastq files...How can we trust them?
by
ATpoint
78k
> I assume that maybe all these are fixable with a script but my question is, can we trust these files? Is it worth spending time and effor…
Comment: Tools or R / Python packages to perfom ML models
by
sil_bioinfo
▴ 30
My main idea is to be able to classify patients with active TB, LTBI and healthy patients as well as possible. The problem is that within t…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
rpolicastro
12k
They could have saved themselves a ton of money by sequencing this on a miseq.
Comment: Annotate Unplaced Scaffold with Chromosome Information
by
cmdcolin
★ 3.4k
I think there are tools like ragtag https://github.com/malonge/RagTag that could help. you can also align your reads back to your new assem…
Traffic: 2178 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6