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1,000 results • Page
2 of 20
Sort: Votes
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Views
Votes
Replies
12
votes
8
replies
3.1k
views
How to change depth of sequence in RNA-seq fastq files
depth of sequence
RNA-Seq
7.2 years ago by
statfa
▴ 750
12
votes
14
replies
5.6k
views
bedtools intersect error?
ChIP-Seq
bedtools
intersect
5.1 years ago by
star
▴ 350
12
votes
17
replies
4.8k
views
How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
Python
Newick
phylogenetics
tree
phylogeny
6.5 years ago by
anonymous1192976466
▴ 50
12
votes
10
replies
2.9k
views
7 follow
SAM / BAM alignments
SAM
BAM
7.2 years ago by
John
13k
12
votes
12
replies
4.9k
views
Need A Script That Finds Whether A String In One Column Matches In Other Columns Of The Same Row
perl
updated 10.3 years ago by
Istvan Albert
100k • written 10.3 years ago by
biolab
★ 1.4k
12
votes
21
replies
3.2k
views
Calculate disease risk based on the genoytype of some SNPs?
SNP
prs
gwas
PRSice
Plink
updated 4.7 years ago by
Biostar
20 • written 4.7 years ago by
Miguel
▴ 30
12
votes
10
replies
4.1k
views
Speed up BLASTp vs NCBI nr database
blast
7.8 years ago by
biotech
▴ 570
12
votes
11
replies
3.2k
views
How To Get Snp Genotypes
snp
genotyping
updated 12.6 years ago by
Lars Juhl Jensen
11k • written 13.0 years ago by
Pri
▴ 20
12
votes
13
replies
2.7k
views
Gene Expression and Systems Biology (homework)
gene
homework
updated 15 months ago by
Ram
43k • written 8.7 years ago by
sarathkurichiyil
• 0
11
votes
22
replies
4.0k
views
No significant DEG: A request to double check my commands for limma.
limma
differential gene expression
covariates
4.9 years ago by
RNAseqer
▴ 260
11
votes
10
replies
10k
views
Extracting from tophat outputs reads pairs and splice-junctions with a single best match
TOPHAT
RNA-Seq
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
trakhtenberg
▴ 160
11
votes
12
replies
1.4k
views
Need help changing RNA-seq code from histat aligner into Star aligner please.
RNA-Seq
3.8 years ago by
screadore
▴ 20
11
votes
2
replies
1.5k
views
Concept behind p-value correction?
RNA-Seq
protemics
genome
R
4.6 years ago by
WUSCHEL
▴ 750
11
votes
10
replies
2.7k
views
6 follow
Genomic statistics from gtf
gene
gtf
5.8 years ago by
plebaninora
• 0
11
votes
11
replies
2.7k
views
Error of Groups in R
affy
limma
oligo
bioconductor
R
updated 7.9 years ago by
Biostar
20 • written 7.9 years ago by
12021560-040
▴ 70
11
votes
11
replies
5.5k
views
6 follow
How to get work experience in Bioinformatics
work experience
python
genome
sequence
6.1 years ago by
ishackm
▴ 110
11
votes
6
replies
6.2k
views
Merging raw Illumina FASTQ files with snakemake
snakemake
illumina
paired-end reads
6.7 years ago by
Jokhe
▴ 140
11
votes
6
replies
3.1k
views
Understanding Supplementary reads.
Bowtie2
MEM
BWA
Dragen
updated 2.2 years ago by
Istvan Albert
100k • written 2.2 years ago by
kiran
▴ 10
11
votes
24
replies
5.3k
views
BWA mem skip orientation
assembly
genome
alignment
next-gen
4.9 years ago by
williamsbrian5064
▴ 510
11
votes
11
replies
998
views
6 follow
Doubt regarding dna sequence length
genome
sequencing
sequence
3.9 years ago by
lokeshp14cs24
• 0
11
votes
10
replies
1.5k
views
Most fishes lay eggs, some are live-bearing, How to find related genes to these different charachteristics?
gene
reproduction
evolution
alignment
updated 7.5 years ago by
Biostar
20 • written 7.5 years ago by
Farbod
★ 3.4k
11
votes
4
replies
2.6k
views
10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
bwa
fastq
alignment
compression
updated 7.8 years ago by
Biostar
20 • written 7.9 years ago by
William
★ 5.2k
11
votes
15
replies
2.8k
views
How do I get the read counts for a specific exon
bam
exon
updated 6.0 years ago by
Ram
43k • written 6.0 years ago by
b10hazard
▴ 30
11
votes
4
replies
22k
views
What is the definition of "read depth" vs "coverage"? (again...)
coverage
depth
read depth
6.9 years ago by
ariel.balter
▴ 250
11
votes
9
replies
2.5k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 15 months ago by
Ram
43k • written 8.8 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
11
votes
29
replies
9.6k
views
SummarizedExperiment nrow differs from ncol
DESeq2
SummarizedExperiment
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
Parham
★ 1.6k
11
votes
3
replies
922
views
How to deal with the probe id mapping to multiple gene ids?
match
microarray
affymetrix
probe
gene
12 months ago by
DareDevil
★ 4.3k
11
votes
5
replies
1.3k
views
Differential expression analysis - issue with replicating results
rnaseq
DESeq2
R
bioconductor
updated 2.3 years ago by
ATpoint
81k • written 2.3 years ago by
suzanne rein
▴ 10
11
votes
7
replies
3.3k
views
Estimating Mean Inner Distance
tuxedo
tophat
RNA-Seq
7.4 years ago by
CF
▴ 50
11
votes
10
replies
5.7k
views
Best mapping software to generate BAM file
BAM
mapping
updated 6.3 years ago by
Biostar
20 • written 6.5 years ago by
Anand Rao
▴ 620
10
votes
8
replies
6.0k
views
Software To Calculate Power Of Exome Sequencing?
exome
statistics
updated 12.6 years ago by
Neilfws
49k • written 12.6 years ago by
Liyf
▴ 300
10
votes
7
replies
1.2k
views
Can two mates have different file size?
sequencing
fastq
5.6 years ago by
marongiu.luigi
▴ 710
10
votes
3
replies
1.4k
views
how to create new file
r
updated 7.4 years ago by
GenoMax
140k • written 7.4 years ago by
forever
▴ 80
10
votes
11
replies
4.6k
views
Trouble Installing Genometools-1.5.1 On My Mac Ox
genome
protein-structure
10.1 years ago by
inadamj
▴ 60
10
votes
10
replies
2.0k
views
Minor allele frequency
GWAS
SNPs
Alleles
updated 5.4 years ago by
Biostar
20 • written 7.3 years ago by
alessandrotestori7
▴ 420
10
votes
15
replies
6.1k
views
DIAMOND blast imported into MEGAN6 has no taxonomic assignment
blast
MEGAN6
Taxonomy
DIAMOND
7.3 years ago by
Farbod
★ 3.4k
10
votes
7
replies
1.2k
views
Better DE analytic tools
RNA-Seq
DE tools
Bayesian empirical approach
5.9 years ago by
mhyunjunkang
▴ 110
10
votes
23
replies
2.4k
views
Two simillarly annotated sequence has no alignment similarity. Why?
blast
alignment
gene
updated 6.4 years ago by
GenoMax
140k • written 6.4 years ago by
Farbod
★ 3.4k
10
votes
19
replies
3.3k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.9 years ago by
GenoMax
140k • written 2.9 years ago by
matt
▴ 20
10
votes
6
replies
935
views
RNA seq, secreted protein
protein
gene
secreted
updated 7 months ago by
Joe
21k • written 15 months ago by
Rob
▴ 170
10
votes
15
replies
6.1k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 12 months ago by
Ram
43k • written 5.5 years ago by
marongiu.luigi
▴ 710
10
votes
15
replies
1.7k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
9 months ago by
Chris
▴ 260
10
votes
2
replies
578
views
any script that can do this task
shell-script
updated 2.0 years ago by
Ram
43k • written 2.0 years ago by
Confused_human
▴ 20
10
votes
6
replies
8.1k
views
Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$modeFraction < 10)) { : missing value where TRUE/FALSE needed"?
fgsea
updated 2.7 years ago by
alserg
▴ 900 • written 2.7 years ago by
gabrielbaldanzi
▴ 10
10
votes
5
replies
7.2k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 19 months ago by
Ram
43k • written 8.6 years ago by
seta
★ 1.9k
10
votes
2
replies
2.7k
views
Standalone Blast Issue
blast
11.8 years ago by
chlazaris
• 0
10
votes
12
replies
1.9k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
5.1 years ago by
msimmer92
▴ 300
10
votes
4
replies
1.4k
views
How to pipe samtools mileup with varscan trio caller?
varscan
samtools
pipe
3.2 years ago by
DareDevil
★ 4.3k
10
votes
1
reply
3.5k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq
qc
updated 19 months ago by
Ram
43k • written 8.8 years ago by
Niek De Klein
★ 2.6k
10
votes
13
replies
5.7k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
7.1 years ago by
Vasu
▴ 770
1,000 results • Page
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Yes, in my actual script I use the whole path to nt_euk. I was just showing `C:/data/nt_euk` as shorthand for the full path. There are no s…
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