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Popular Question to
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Recent Replies
Comment: Transform Data into DNA picture
by
swbarnes2
12k
This is totally wrong. Completely wrong. This is not how rs ids are used at all.
Over time, the coordinate systems of genomes might shif…
Comment: Transform Data into DNA picture
by
barslmn
▴
90
Human genomes have two copies, one from mom one from dad. Any genotype other than rs4970383 is *homozygous* meaning person got the same all…
Comment: Problems with perl-xml-parser-2.44-4
by
GenoMax
123k
Do this. Copy and paste the text data in editor window. Then use `101010` button in the edit bar to format it as `code`.
So it looks l…
Answer: How to extract repeat element coordinates from an Ensembl genome?
by
barslmn
▴
90
If you don't want to download the whole data at once you can stream fastq files from ensembl directly and process.
for chrom in $(ec…
Comment: Problems with perl-xml-parser-2.44-4
by
Юлия
▴
10
Sorry please for this format. ![:(][1]
[1]: /media/images/62ca526b-1dfc-4ac3-95eb-672e5754
Comment: unique k-mers
by
Юлия
▴
10
when I tried this: k=0
unique=[]
genome_length=len(sequence) - 23
while k < genome_length:
kmer = sequence[k:k+23]
if kmer in uniqu…
Comment: Transform Data into DNA picture
by
anasjamshed1994
▴
120
I am a jeweller so I want to make DNA design bracelet that showing the mutation
Comment: Transform Data into DNA picture
by
anasjamshed1994
▴
120
yes, I know there is no such tool that exists.
My question is what is the meaning of AC in genotype? Does it mean A changes to C(nonsynony…
Comment: Problems with perl-xml-parser-2.44-4
by
Mensur Dlakic
★
21k
You have already done this in a separate thread, so I feel compelled to tell you: I can't read anything in these figure without getting wit…
Comment: How to decide when to have local hardware vs cloud computing?
by
GenoMax
123k
Did you check into local security and/or other policies? If they prohibit use of cloud resources then you have no choice.
Even if there a…
Comment: add 1/2 to fastq header
by
barslmn
▴
90
This can be achived with awk too.
zcat myfastq.gz | awk '/^@/{$0=$0"TexIWantToAdd"} 1'
Comment: CNVKit does not output all the accessible regions in the targets bed file
by
barslmn
▴
90
That kind of mismatch is the usual suspect. What is the result if you manually create the bed file and supply it with `--targets` argument?…
Comment: Transform Data into DNA picture
by
barslmn
▴
90
These rsids are identifiers for specific alleles. Genotypes here indicates the alleles observed at that locus. https://en.wikipedia.org/wik…
Comment: Mapping all 32-mers within Hamming Distance = 3
by
giova34
▴
10
@genomax Thank you so much for this response! I think I misspoke (and learned the difference btwn alignment vs. mapping https://www.biostar…
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