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469 results • Page
1 of 10
Sort: Views
Rank
Views
Votes
Replies
1
vote
4
replies
4.8k
views
Conditionally coloring the fold change values to plot a heatmap using pheatmap
R
heatmap
updated 9 days ago by
Ram
39k • written 5.2 years ago by
chetana
▴ 60
0
votes
4
replies
4.8k
views
Sequence alignment length
multiple-sequence-alignment
updated 12 days ago by
Ram
39k • written 6.3 years ago by
biobudhan
▴ 20
3
votes
4
replies
3.8k
views
What are the Pros and Cons of working in Bioinformatics???
career
bio
updated 9 days ago by
Ram
39k • written 5.3 years ago by
scottschu97
▴ 20
0
votes
4
replies
3.7k
views
What is Dunn's multiple comparison test?
statistics
updated 12 days ago by
Ram
39k • written 5.7 years ago by
Koreanraichu
• 0
0
votes
16
replies
3.1k
views
Gff to genbank - feature is missing
DNA
augustus
gff3
genbank
updated 5 days ago by
Ram
39k • written 5.0 years ago by
rororo
• 0
0
votes
0
replies
3.1k
views
Find conserved blocks and extract subalignment with Python
multiple-sequence-alignment
python
updated 12 days ago by
Ram
39k • written 6.1 years ago by
Kevin D
▴ 30
0
votes
5
replies
3.0k
views
Phylogeny Heatmap with Python
multiple-sequence-alignment
updated 12 days ago by
Ram
39k • written 4.2 years ago by
marina.gerges
• 0
0
votes
12
replies
2.9k
views
comparative analysis of two strains of bacteria's genomes
genome
gene
updated 11 days ago by
Ram
39k • written 5.6 years ago by
fonteneaudam
▴ 20
0
votes
3
replies
2.8k
views
From FASTQ to clean BAM using GATK tutorial #6484
gatk
MergeBamAlignment
uBAM
bamclipper
updated 11 days ago by
Ram
39k • written 5.6 years ago by
lamteva.vera
▴ 220
1
vote
14
replies
2.8k
views
How to convert Haplotypes file to PLINK format data
R
plink
updated 5 days ago by
Ram
39k • written 5.0 years ago by
bha
▴ 80
6
votes
6
replies
2.6k
views
ChIP-Seq Intensity Analysis
R
ChIP-Seq
updated 11 days ago by
Ram
39k • written 5.5 years ago by
solveforj
▴ 20
1
vote
3
replies
2.6k
views
Multiple Sequence Alignment Python
multiple-sequence-alignment
ClustalW
Biopython
updated 12 days ago by
Ram
39k • written 5.1 years ago by
Manu Madhavan
▴ 20
2
votes
8
replies
2.5k
views
How to convert a database from protein to nucleotide
blastn
unix
blastx
blast
updated 17 days ago by
Ram
39k • written 6.2 years ago by
AJTrunkskun94
• 0
1
vote
10
replies
2.5k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 2 days ago by
Ram
39k • written 4.2 years ago by
Kumar
▴ 100
1
vote
4
replies
2.5k
views
DBD::mysql::st execute failed: The table 'InplgOrthoInplg
orthomcl
ortho
ubuntu
mysql
updated 4 days ago by
Ram
39k • written 5.0 years ago by
wocana
▴ 20
0
votes
0
replies
2.5k
views
Are secondary alignments (SAM) produced by STAR aligner linked with MAPQ score?
alignment
RNA-Seq
updated 17 days ago by
Ram
39k • written 6.2 years ago by
Claudio
• 0
0
votes
2
replies
2.5k
views
How to get Haplotype file from PLINK format data
SNP
PLINK
updated 6 days ago by
Ram
39k • written 5.1 years ago by
bha
▴ 80
1
vote
0
replies
2.5k
views
Running Multiple Alignments in MEGA with a script produces errors.
next-gen
RNA-Seq
MEGA
multiple-alignment
updated 12 days ago by
Ram
39k • written 7.2 years ago by
rachelrodgers12
▴ 10
1
vote
1
reply
2.4k
views
Hmmer Alignment input parse error
alignment
hmmer
updated 16 days ago by
Ram
39k • written 5.9 years ago by
hivemind
▴ 20
3
votes
4
replies
2.4k
views
Unable to install Autogrid4
autogrid
software-error
autogrid4
updated 11 days ago by
Ram
39k • written 2.2 years ago by
roybatty269
• 0
1
vote
4
replies
2.3k
views
Using a Multiple Seq Alignment tool for pairwise alignments possible?
multiple-sequence-alignment
msa
alignment
updated 12 days ago by
Ram
39k • written 7.1 years ago by
nchuang
▴ 260
0
votes
7
replies
2.2k
views
How much time should be expected for building a database by kraken2-build?
kraken2
updated 16 days ago by
Ram
39k • written 2.3 years ago by
thitrucminh.nguyen
• 0
0
votes
2
replies
2.2k
views
Error while running MEGAX
multiple-sequence-alignment
MEGAX
updated 12 days ago by
Ram
39k • written 5.0 years ago by
Mohak
▴ 20
0
votes
4
replies
2.1k
views
picard markduplicate output smaller file
picard
markduplicates
gatk
updated 2 days ago by
Ram
39k • written 4.4 years ago by
Peter Chung
▴ 190
0
votes
5
replies
2.0k
views
error during installationi of KisSplice
cpp
c
RNA-Seq
kissplice
SNP
updated 6 days ago by
Ram
39k • written 6.8 years ago by
yoyofangliu
• 0
1
vote
2
replies
2.0k
views
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
vcftools
samtools
faidx
tabix
1000Genomes
updated 6 days ago by
barslmn
★ 1.5k • written 5.6 years ago by
shrutishreyajha
▴ 10
1
vote
3
replies
1.8k
views
Translate from hsa-let- to MIMAT type
conversion
updated 16 days ago by
Ram
39k • written 6.0 years ago by
landscape95
▴ 180
0
votes
0
replies
1.8k
views
IDBA-UD Parameters for Bio Linux?
Linux
Bio
parameters
IDBA-UD
updated 18 days ago by
Ram
39k • written 6.2 years ago by
Seot
• 0
3
votes
6
replies
1.8k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 11 days ago by
Ram
39k • written 5.6 years ago by
Xylanaser
▴ 80
0
votes
1
reply
1.8k
views
Get pairwise scores from alignment without re-aligning?
multiple-sequence-alignment
bit-score
alignment
updated 12 days ago by
Ram
39k • written 6.4 years ago by
mpd
• 0
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 3 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
0
votes
2
replies
1.7k
views
How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?
ddRAD
next-gen
Stacks
DBR
updated 12 days ago by
Ram
39k • written 5.7 years ago by
beausoleilmo
▴ 530
0
votes
2
replies
1.7k
views
Fourfold degenerate codons in VCF File
vcf
genome
updated 2 days ago by
Ram
39k • written 4.4 years ago by
crippa.to
• 0
0
votes
4
replies
1.6k
views
Extra header column stopping EMMAX (C), but not seen in input files
emmax
genomics
Cpp
plink
GWAS
updated 6 days ago by
Ram
39k • written 5.3 years ago by
michael.nagle
▴ 100
1
vote
2
replies
1.6k
views
Learning some Drop-Seq as a first approach to RNA-Seq while on vacation
hardware
RNA-Seq
drop-seq
updated 13 days ago by
Ram
39k • written 5.8 years ago by
Anima Mundi
★ 2.9k
0
votes
2
replies
1.6k
views
Need help with error fromTOMplot network heatmap: "Error in x[, iy] : subscript out of bounds"
WGCNA
TOMplot
updated 16 days ago by
Ram
39k • written 2.2 years ago by
dlsublime
• 0
0
votes
1
reply
1.6k
views
project_tree_builder.exe not found, problem in configuring build tree of NCBI c++ toolkit
cpp
toolkit
blast
NCBI
updated 6 days ago by
Ram
39k • written 7.4 years ago by
arfaj a
▴ 10
0
votes
0
replies
1.6k
views
mothur - stability.files does not contain sample group names
mothur
software-error
updated 13 days ago by
Ram
39k • written 5.8 years ago by
pjdavis
▴ 20
3
votes
7
replies
1.6k
views
align_and_estimate_abundance error Trinty
align_and_estimate_abundance
RNA-SEQ
RSEM
Trinity
updated 13 days ago by
Ram
39k • written 20 months ago by
Princy
▴ 60
5
votes
5
replies
1.6k
views
bio-newbie / gene research / tools and methods
methods
research
gene
updated 10 days ago by
Ram
39k • written 5.4 years ago by
wizofe
• 0
1
vote
3
replies
1.5k
views
Using SeqAn and other external libraries in C++
Read-Mapping
SeqAn
updated 11 days ago by
Ram
39k • written 5.6 years ago by
anshupa.vssut
▴ 50
0
votes
3
replies
1.5k
views
Converting a mutation data file into vcf?
next-gen-sequencing
exome
updated 16 days ago by
Ram
39k • written 6.0 years ago by
prathyushakonda
▴ 20
0
votes
0
replies
1.5k
views
how to detect the presence of Integrative and conjugative elements in bacterial genome.
Genomics
updated 12 days ago by
Ram
39k • written 5.7 years ago by
Optimist
▴ 180
0
votes
1
reply
1.5k
views
Why does shoremap calculate allele frequency this way?
shoremap
allele-frequency
updated 11 days ago by
Ram
39k • written 5.7 years ago by
emilywynn6
▴ 10
2
votes
7
replies
1.5k
views
Technology Stack of NCBI (Genbank, GEO, etc.)
sequence
ncbi
gene
genbank
updated 6 days ago by
Ram
39k • written 5.2 years ago by
navela78
▴ 70
0
votes
0
replies
1.5k
views
CD-hit records matching and parsing
bash
python
cd-hit
text-processing
updated 2 days ago by
Ram
39k • written 4.2 years ago by
mnmalash
• 0
0
votes
5
replies
1.4k
views
Best Blast Hits from Tabular Outputs in Multiple files
python
shell
blast
updated 11 days ago by
Ram
39k • written 5.6 years ago by
trini1god
• 0
1
vote
2
replies
1.4k
views
Getting full list for DEGs in Noiseq
RNA-Seq
updated 10 days ago by
Ram
39k • written 5.4 years ago by
mubangafchama
▴ 10
0
votes
5
replies
1.4k
views
terminal can't activate base automatically (conda)
conda
updated 17 days ago by
Ram
39k • written 21 months ago by
Binghong
▴ 20
0
votes
0
replies
1.4k
views
envelope and alignment coordinates in hmmsearch result
hmmer
sequence
alignment
hmmsearch
updated 2 days ago by
Ram
39k • written 4.4 years ago by
sanjeet00001992
• 0
469 results • Page
1 of 10
Recent Votes
A: how to count variants par sample per chromosome in a vcf file?
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
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Comment: How to deal with duplicated gene IDs in TCGA RNA expression data?
by
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▴ 30
So sorry, is data from the TCGA project. The only columns of data it has, are Hugo symbols, Gene Entrez IDs and Tumor Sample Barcodes. I do…
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What software is this referring to?
Comment: Single cell chemistry
by
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129k
As you can see the data is one base short. If cell ranger is unable to analyze the data you may need to look elsewhere.
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`Bioinformatics Master's Student` is not an informative title for your question. I imagine most people will ignore it by assuming that this…
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It's a fastq file. So what is the question?
Comment: Single cell chemistry
by
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13k
As far as I know, v2 must mean 10x. But if it the cell barcode + umi is 26 bases, you don't have that.
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Hi, I don't understand why, if I change TSS +1000/-1000 or +3000/-3000 or +10.000/-10.000 the number of regions annotated is the same. More…
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Thank you, I will check it out
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I actually have replicates. thank you
Comment: Why are some WES VCFs larger than others?
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21k
"It's not a gvcf with site coverage for the entire cohort, I called the variants myself" This sentence doesn't make sense to me. gVCFs are …
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Dr William Klubinski
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It seems the data appears to be in the beta value format (?), which represents the proportion of methylated probe intensity over the total …
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Hi, can you please add the link to the page you mentioned? AFAIK some data have restricted access. Maybe full GWAS data belongs to this cat…
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Did you come across this? https://www.biostars.org/p/432297/ Regards, Prasun
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