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558 results • Page
1 of 12
Sort: Votes
Rank
Views
Votes
Replies
12
votes
4
replies
499
views
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
genome
bed
transcript
TSS
21 days ago by
Rafael Soler
★ 1.2k
7
votes
12
replies
875
views
Integrated genes from bulk RNA seq and ATAC seq
bulk-RNA
integrated
ATAC-seq
updated 11 days ago by
Sasha
▴ 180 • written 18 days ago by
Chris
▴ 100
7
votes
7
replies
4.4k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 6 days ago by
Ram
39k • written 4.4 years ago by
stu111538
▴ 80
6
votes
7
replies
1.4k
views
Bioinformatics Master Project With More Focus on Developing Algorithm and Software
Masters
Algorithm
Software
updated 24 days ago by
Ram
39k • written 6.0 years ago by
nilo
▴ 90
6
votes
9
replies
958
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM
Bowtie
updated 25 days ago by
Ram
39k • written 4 months ago by
luzglongoria
▴ 40
6
votes
6
replies
2.7k
views
ChIP-Seq Intensity Analysis
R
ChIP-Seq
updated 19 days ago by
Ram
39k • written 5.5 years ago by
solveforj
▴ 20
6
votes
12
replies
591
views
Help with error in cellranger
Cellranger
updated 20 days ago by
GenoMax
129k • written 20 days ago by
Chris
▴ 100
6
votes
6
replies
574
views
On "wings" in volcano plots...
DEG
volcano
DGE
statistics
DE
updated 17 days ago by
ATpoint
72k • written 18 days ago by
kalavattam
▴ 120
5
votes
7
replies
892
views
error while using cyvcf2 to parse the vcf file
cyvcf2
vcf
htslib
updated 24 days ago by
Ram
39k • written 12 months ago by
rheab1230
▴ 140
5
votes
5
replies
1.6k
views
bio-newbie / gene research / tools and methods
methods
research
gene
updated 18 days ago by
Ram
39k • written 5.4 years ago by
wizofe
• 0
5
votes
4
replies
1.5k
views
Detection of DE genes among different tissues of an organism during time - RNA seq
detection
DE-genes
multi-treatments
time-series
updated 6 days ago by
Ram
39k • written 6.9 years ago by
statfa
▴ 720
5
votes
7
replies
648
views
Are datasets for a unique cells, that downloded using sratoolkit?
RNA-Seq
sequencing
updated 15 days ago by
supernovamik
• 0 • written 3.4 years ago by
ee.mohseni.alert
▴ 50
4
votes
7
replies
2.2k
views
low bootstrap value?
phylogeny
genome
alignment
updated 5 days ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
4
votes
6
replies
539
views
How to pass from DNA to AA fasta
genetics
updated 14 days ago by
Buffo
★ 2.2k • written 17 days ago by
Anderson Stiward
• 0
4
votes
8
replies
549
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
13 days ago by
eesha28112001
• 0
4
votes
8
replies
1.6k
views
How to extract promoter sequences from a plant draft genome?
promoter
genome
updated 3 days ago by
Ram
39k • written 3.7 years ago by
Kumar
▴ 100
4
votes
6
replies
1.5k
views
Why weblogo of biopython doesn't work?
Biopython
Weblogo
updated 3 days ago by
minakshiboruahassam
• 0 • written 9 months ago by
Plus
▴ 20
4
votes
6
replies
743
views
Open-Source software. Good or bad for the market?
genomic-analysis
software
updated 17 days ago by
Ram
39k • written 5.3 years ago by
Bioinformatician90
• 0
4
votes
3
replies
368
views
What is the difference between vst and rlog to perform PCA ?
rlog
PCA
vsd
updated 29 days ago by
ATpoint
72k • written 29 days ago by
Amr
▴ 140
4
votes
4
replies
279
views
Does adding reads cause batch effects?
kallisto
RNAseq
updated 4 days ago by
ATpoint
72k • written 4 days ago by
bioinfo
▴ 80
4
votes
6
replies
440
views
how to plot SV(structural variants) from many assemblies of a given locus
SV
19 days ago by
natalev
▴ 20
4
votes
4
replies
359
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
updated 6 days ago by
Joe
21k • written 10 days ago by
antoine.fauchois92
▴ 20
4
votes
5
replies
1.2k
views
Distributed / parallel computing in bioinformatics
distributed-computing
updated 21 days ago by
Ram
39k • written 5.9 years ago by
CY
▴ 710
3
votes
4
replies
2.4k
views
Unable to install Autogrid4
autogrid
software-error
autogrid4
updated 19 days ago by
Ram
39k • written 2.3 years ago by
roybatty269
• 0
3
votes
1
reply
260
views
chromosome location to gene name and aa change
variant-annotation
15 days ago by
Zi
• 0
3
votes
8
replies
1.3k
views
Kallisto mapping paired end
Kallisto
mapping
updated 24 days ago by
Ram
39k • written 15 months ago by
Dk
▴ 20
3
votes
5
replies
355
views
Uniprot API access to download .pdb files
PDB
API
Python
Uniprot
12 days ago by
jdrohan
• 0
3
votes
3
replies
482
views
[bwa_aln_core] calculate SA coordinate... script.sh: line 91: 183402 Killed
HPC
BWA
Alignment
updated 24 days ago by
Ram
39k • written 16 months ago by
qstefano
▴ 20
3
votes
6
replies
1.8k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 19 days ago by
Ram
39k • written 5.6 years ago by
Xylanaser
▴ 80
3
votes
7
replies
1.1k
views
Find 3'UTRs for species
Assembly
alignment
updated 3 days ago by
Ram
39k • written 3.8 years ago by
Palgrave
▴ 110
3
votes
12
replies
2.1k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 4 days ago by
Pegasus
▴ 90 • written 3.7 years ago by
mnazir
▴ 10
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 11 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
3
votes
16
replies
9.9k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 6 days ago by
Ram
39k • written 4.2 years ago by
Star
▴ 60
3
votes
5
replies
431
views
STAR error with a loop
STAR
RNA
transcriptomics
updated 25 days ago by
Ram
39k • written 6 months ago by
luzglongoria
▴ 40
3
votes
2
replies
578
views
STAR aligner FATAL ERROR not correct
fastq
star
updated 21 days ago by
Ram
39k • written 17 months ago by
Mike
▴ 10
3
votes
6
replies
566
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
12 days ago by
Sowmya Pulapet
▴ 30
3
votes
4
replies
3.8k
views
What are the Pros and Cons of working in Bioinformatics???
career
bio
updated 17 days ago by
Ram
39k • written 5.3 years ago by
scottschu97
▴ 20
3
votes
7
replies
1.6k
views
align_and_estimate_abundance error Trinty
align_and_estimate_abundance
RNA-SEQ
RSEM
Trinity
updated 21 days ago by
Ram
39k • written 20 months ago by
Princy
▴ 60
3
votes
4
replies
634
views
R package DESeq2 in R 3.5.1
R
updated 25 days ago by
Ram
39k • written 4 months ago by
sehriban.buyukkilic
• 0
3
votes
4
replies
1.3k
views
fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output
genomics
phasing
fastPHASE
updated 14 days ago by
Ram
39k • written 5.2 years ago by
lakemonster
▴ 10
3
votes
6
replies
1.1k
views
how to get total read count, mapped read count and unmapped read count from multiple sam or bam files
RNAseq
PYTHON
R
bash
updated 20 days ago by
Ram
39k • written 2.7 years ago by
Bioinfonext
▴ 430
3
votes
9
replies
534
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
19 days ago by
Rafael
▴ 10
3
votes
5
replies
1.3k
views
Trouble with best practices
samtools
WES
NGS
GATK
updated 17 days ago by
Ram
39k • written 5.3 years ago by
erarroji
• 0
2
votes
3
replies
862
views
Freebayes command stopped due to lack of space
freebayes
SNP-calling
updated 12 days ago by
Ram
39k • written 5.0 years ago by
amcheroo
• 0
2
votes
1
reply
200
views
P values on box plots
sequencing
Statistics
RNA
updated 25 days ago by
Basti
★ 1.6k • written 25 days ago by
Abdullah
▴ 10
2
votes
3
replies
339
views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
RSeQC
26 days ago by
Dan
▴ 120
2
votes
8
replies
2.6k
views
How to convert a database from protein to nucleotide
blastn
unix
blastx
blast
updated 25 days ago by
Ram
39k • written 6.2 years ago by
AJTrunkskun94
• 0
2
votes
3
replies
271
views
Using RNA-seq to detect pathogen sequences in host tissue
RNA-seq
12 days ago by
erik.burchard
▴ 10
2
votes
5
replies
389
views
RNA SEQ reads assembly for illumina sequenced data
NGS
linux
nanopore
updated 26 days ago by
Ram
39k • written 5 weeks ago by
Adyasha
• 0
2
votes
2
replies
181
views
bioinformatic analysis protocol performed by CD Genomics
Genomics
CD
analysis
bioinformatic
Protocol
updated 4 days ago by
Dr William Klubinski
▴ 80 • written 4 days ago by
linnet.roque6
▴ 10
558 results • Page
1 of 12
Recent Votes
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Answer: Perl. How to retrieve data until a keyword in GenBank?
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Comment: Perl. How to retrieve data until a keyword in GenBank?
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THANK YOU!! Your method works!! And by removing: $data = ''; I figured out how to retrieve the annotation info with a prompt: …
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Ok but i have only vep files i don't have vcf files
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