Limit : this month
all time today this week this month this year
685 results • Page 1 of 14
Sort: Votes
Rank Views Votes Replies
18
votes
7
replies
493
views
How to calculate if statistically a variable of a bulk RNA-seq affects the comparison of interest?
DESeq2 Variable RNA-seq
15 days ago by Rafael Soler ★ 1.1k
12
votes
8
replies
342
views
Align 16S sequence to a reference
16S sequence alignment
updated 16 days ago by 1.7k • written 17 days ago by ▴ 110
9
votes
2
replies
229
views
Answer needed urgently
Deep
updated 16 days ago by ★ 20k • written 16 days ago by • 0
8
votes
4
replies
1.6k
views
using different tools to identify differential exprssed genes
rna-seq RNA-Seq R
updated 2 days ago by 37k • written 7.1 years ago by ▴ 20
8
votes
9
replies
2.5k
views
error in rstudio
csv matrix rstudio
updated 11 hours ago by 37k • written 7.1 years ago by ★ 4.1k
7
votes
8
replies
2.3k
views
Discrepency between number of reads tophat
RNA-Seq tophat software-error
updated 1 day ago by 37k • written 7.1 years ago by ▴ 380
7
votes
4
replies
2.7k
views
Mapping BAM/SAM file back to reference?!?!
SAM reference BWA BAM
updated 23 days ago by 37k • written 7.0 years ago by ▴ 50
6
votes
1
reply
1.9k
views
gene expression in bioinformatics
gene-expression
updated 15 hours ago by 37k • written 7.1 years ago by • 0
6
votes
6
replies
4.0k
views
Performance of circRNA detection tools
circRNA RNA-Seq
updated 23 days ago by 37k • written 7.2 years ago by ▴ 240
6
votes
6
replies
3.0k
views
Bowtie2 classification of discordantly mapped pairs
discordant-pairs bowtie2 alignment
updated 22 days ago by 37k • written 7.0 years ago by ▴ 30
6
votes
2
replies
1.6k
views
Periodicity in SNP calling quality - is this normal?
RNA-Seq VCF GATK SNP
updated 21 days ago by 37k • written 7.0 years ago by 13k
6
votes
3
replies
1.6k
views
PLINK results interpretation
SNP software-error
updated 2 days ago by 37k • written 7.2 years ago by ▴ 40
6
votes
10
replies
543
views
Understanding bam tracks
RNA sequencing bam
updated 22 days ago by 149k • written 23 days ago by ▴ 40
6
votes
7
replies
2.1k
views
Standardizing the language of lab protocols [Current status]
protocols automation
updated 14 days ago by 37k • written 7.0 years ago by ▴ 20
5
votes
1
reply
3.3k
views
Sample clustering in RNASeq
deseq2 RNASeq heatmap
updated 1 day ago by 37k • written 7.1 years ago by ▴ 120
5
votes
3
replies
2.2k
views
How to deal with many uncharacterized protein in the blastx results?
RNA-Seq sequencing Assembly blast
updated 9 days ago by 37k • written 7.1 years ago by ★ 1.7k
5
votes
8
replies
2.9k
views
Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment comes from?
fastqc next-gen k-mer
updated 10 days ago by 37k • written 7.1 years ago by ★ 2.6k
5
votes
10
replies
353
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38 ncbi grch37 fasta
15 days ago by magnolia ▴ 10
5
votes
20
replies
2.9k
views
DiscoSnp Segmentation fault
snp discosnp
updated 1 day ago by 37k • written 7.1 years ago by ▴ 130
4
votes
4
replies
1.6k
views
is Hapmap or 1000 genome VCF data is from diseased or healthy one
RNA-Seq vcf purifying-selection
updated 13 days ago by 37k • written 7.0 years ago by ▴ 230
4
votes
4
replies
313
views
how to handle the UMI sequence of Immune Repertoire sequencing .fastq data
fastp Immune Repertoire IR-SEQ pandaseq sequencing UMI
15 days ago by youknow ▴ 20
4
votes
2
replies
2.4k
views
Change output name for ADMIXTURE analysis
admixture
updated 15 days ago by 37k • written 7.0 years ago by ▴ 700
4
votes
7
replies
3.4k
views
DEseq with 3 replicates and two conditions
RNA-Seq
updated 12 hours ago by 37k • written 7.1 years ago by ▴ 20
4
votes
8
replies
5.8k
views
Error while demultipleaxing .bcl to .fastq files
sequencing genome alignment
updated 16 days ago by 37k • written 7.0 years ago by ▴ 210
4
votes
8
replies
1.1k
views
mutate multiple conditions in R
ifelse mutate Programming R offtopic
25 days ago by logbio ▴ 30
4
votes
8
replies
315
views
Help to know about an error related to awk command in cmd
plink cmd Linux awk
6 days ago by Madhawa ▴ 10
3
votes
4
replies
3.4k
views
Strange distribution of Fst values in BayeScan
Fst outliers SNP BayeScan
updated 23 days ago by 37k • written 7.0 years ago by ▴ 20
3
votes
4
replies
4.6k
views
Find top genes that correlate with my gene of interest using TCGA RNA-Seq data.
RNA-Seq gene-expression R correlation
updated 9 days ago by • 0 • written 6.6 years ago by ▴ 20
3
votes
5
replies
1.5k
views
can you get what does my adviser mean please?
tophat2 multiple-alignment
updated 9 days ago by 37k • written 7.1 years ago by ★ 4.1k
3
votes
0
replies
2.5k
views
How to use an ordinal or discrete phenotype in plink?
plink
updated 16 days ago by 37k • written 7.0 years ago by ▴ 30
3
votes
4
replies
212
views
How to fix: Error: No module named HTSeq.scripts?
HTSeq
1 day ago by Chris ▴ 30
3
votes
3
replies
4.4k
views
What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
RNA-Seq
updated 2 days ago by 37k • written 7.1 years ago by ★ 1.4k
3
votes
8
replies
521
views
Decontamination of genome assembly
genome assembly
updated 29 days ago by 52k • written 4 weeks ago by ▴ 260
3
votes
3
replies
328
views
How to annotate probe to nearest gene promoter?
ChIP-seq bed seqmonk annotate DrIP-Seq
20 days ago by BioNoobie ▴ 20
3
votes
3
replies
5.2k
views
R - Merge 2 network with different color nodes
merge R networks
updated 23 days ago by 37k • written 7.0 years ago by ▴ 270
3
votes
6
replies
2.5k
views
fastq can't be opened
fastq sra
updated 23 days ago by 37k • written 7.0 years ago by ★ 4.1k
3
votes
5
replies
340
views
Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 16 days ago by 21k • written 16 days ago by ▴ 130
3
votes
6
replies
344
views
PLINK - individual variance with the SNPs weights
plink snp variant population pca
10 days ago by young_bioinformatician ▴ 170
3
votes
5
replies
1.3k
views
VCF file format
vcf
updated 29 days ago by 37k • written 7.0 years ago by • 0
2
votes
4
replies
1.7k
views
RNA-seq study Looking for for Cancer and Virus FTP Databases
RNA-Seq database ftp
updated 15 days ago by 37k • written 7.0 years ago by • 0
2
votes
3
replies
1.8k
views
Detecting abbreviations in publications - text mining
text-mining publication algorithm
updated 2 days ago by 37k • written 7.1 years ago by ▴ 20
2
votes
4
replies
237
views
RNA-seq analysis of coaggregation of bacteria
bacteria analysis RNA-seq
updated 16 days ago by 9.3k • written 17 days ago by • 0
2
votes
1
reply
2.4k
views
cn.mops settings for calling CNVs in MIP data
cancer cn.mops mip
updated 10 days ago by 37k • written 7.1 years ago by ▴ 40
2
votes
10
replies
403
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 22 days ago by 65k • written 23 days ago by ▴ 60
2
votes
7
replies
4.3k
views
How to Find Exon - Intron Junctions for 1 Exon - Intron using UCSC Genome Browser
RNA-Seq ChIP-Seq gene
updated 23 days ago by 37k • written 7.0 years ago by ▴ 170
2
votes
12
replies
703
views
The best way to get gene lengths for 15K+ genes?
r EDAseq RNA-seq
21 hours ago by JACKY ▴ 10
2
votes
2
replies
7.6k
views
How to filter out special sequences from a fasta file based on sequence IDs txt
fasta
updated 29 days ago by 37k • written 7.0 years ago by ▴ 130
2
votes
0
replies
3.3k
views
Running Pindel On Multiple Samples Produces More Calls Per Sample Than Running Pindel On Single Sample?
pindel exome
updated 15 days ago by 37k • written 8.7 years ago by ▴ 30
2
votes
12
replies
1.7k
views
Nothing will align with HTSeq?
RNA-Seq htseq
updated 15 days ago by 37k • written 7.0 years ago by ▴ 580
2
votes
0
replies
1.6k
views
Enrichment in bacterial core gene
bacterial-core gene-enrichment
updated 11 hours ago by 37k • written 7.1 years ago by ▴ 20
685 results • Page 1 of 14
Recent Votes
Comment: Fasta headers column spilt or selection
A: Deseq Analysis With Two Samples Without Replicates, Most Padj Equal To 1 And Na
Answer: "RNA-seq by Example" Differential Gene Expression Error
Answer: "RNA-seq by Example" Differential Gene Expression Error
Answer: Microarray DEG analysis visualisation
C: differential expression analysis with DESeq2 & edgeR
Answer: Are alternative splicing analysis and differential expression analysis of RNA-se
Recent Locations • All
Singapore, just now
Bangladesh, 1 minute ago
India, 1 minute ago
Taiwan, 1 minute ago
Spain, 2 minutes ago
Italy, 3 minutes ago
France, 3 minutes ago
Recent Awards • All
Scholar to patrickdm ▴ 170
Scholar to GenoMax 120k
Popular Question to Kasthuri ▴ 290
Scholar to v.berriosfarias ▴ 90
Scholar to Mensur Dlakic ★ 20k
Popular Question to Raygozak ★ 1.4k
Teacher to ATpoint 65k
Recent Replies
Answer: Undertand org.Hs.eg.db package by Basti ▴ 860
It is a human genome annotation package, from Entrez Gene IDs of your genes, you can retrieve a lot of useful annotation such as Gene Ontol…
Comment: Can we use UMAP clustering on bulk data? by 5heikki 10k
If you have a distance matrix of some sort, I recommend that you try affinity propagation..
Comment: Is there a tutorial/ demo on single cell nuclei-seq analysis by Emily ▴ 30
Is there a python version or currently only available in R?
Comment: In GWAS Analysis, my top most significant SNPs from pre-imputation data does not by debleena.guin • 0
We did not perform multiple correction. The SNPs significant pre-imputation (unadjusted p < 1x10-16) is no longer significant post imputati…
Answer: Deseq Analysis With Two Samples Without Replicates, Most Padj Equal To 1 And Na by rutuja.digraskar • 0
NOIseq gave me good results with foldchange and expression difference for no replicates.. I used the following tutorial: https://jiankaiwa…
Comment: combine headers from two fata files by emiliomastriani ▴ 30
Thanks iraun. The merger line is perfect.
Comment: My ensembl requests are suddenly very slow - why? by ngarber ▴ 50
No need, that can't be the problem because it doesn't always die at that particular ID - sometimes it dies after only a couple! It never ge…
Comment: Convert Gene Ensemble IDs to Gene Symbols on R by igor 13k
Novel genes used to be assigned temporary cryptic placeholder symbols like AC010680.1 or LINC02050 or C1orf43. They recently stopped doing …
Comment: "RNA-seq by Example" Differential Gene Expression Error by Jeremy ▴ 590
Got it. I missed that update. Thanks a lot!
Comment: My ensembl requests are suddenly very slow - why? by GenoMax 120k
Perhaps there is an error in the compara database for that entry. Can you remove that and see if your job proceeds?
Comment: My ensembl requests are suddenly very slow - why? by ngarber ▴ 50
It shows as error 503: "service unavailable" when I click that link... also, here's a strange thing, I just tried from another internet con…
Answer: Kraken 2 example txt files by Istvan Albert 94k
There is a new paper out on Kraken 2, they ought to have some results: * Metagenome analysis using the Kraken software suite https://…
Comment: My ensembl requests are suddenly very slow - why? by GenoMax 120k
That ID does have homologs available: https://usa.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000185104;r=1:50437028-509…
Answer: "RNA-seq by Example" Differential Gene Expression Error by GenoMax 120k
You create the `design.csv` file using an editor in step 3 of the step-by-step process. It needs to contain the following: sample,co…
Comment: Dramatic decrease of mapping efficiency between Bwameth and Bismark by reza.jabal ▴ 560
What model organism are you using in your experiment? Human, model organism or non-model organism?
Traffic: 1070 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6