0
votes
0
replies
33
views
0
votes
0
replies
43
views
updated 2 hours ago by
GenoMax
141k
•
written 3 hours ago by
N.Y.Wiyana-Hewage
•
0
0
votes
2
replies
142
views
0
votes
2
replies
145
views
0
votes
1
reply
85
views
0
votes
0
replies
56
views
updated 7 hours ago by
Ram
43k
•
written 7 hours ago by
samuelkalandarov2002
•
0
0
votes
1
reply
122
views
updated 8 hours ago by
Ram
43k
•
written 8 hours ago by
_quantum_girl_
▴
10
0
votes
0
replies
62
views
0
votes
0
replies
62
views
8 hours ago by
enferdeflame
•
0
0
votes
0
replies
62
views
0
votes
1
reply
360
views
0
votes
3
replies
219
views
0
votes
0
replies
76
views
updated 9 hours ago by
Ram
43k
•
written 15 hours ago by
bioinfo223
▴
10
0
votes
0
replies
87
views
15 hours ago by
P.
•
0
0
votes
0
replies
89
views
0
votes
0
replies
120
views
22 hours ago by
renan.igor
•
0
0
votes
3
replies
341
views
0
votes
2
replies
284
views
20 hours ago by
22211020193
•
0
2
votes
7
replies
587
views
updated 42 minutes ago by
joe
▴
500
•
written 1 day ago by
quentinperriere
•
0
0
votes
4
replies
400
views
17 hours ago by
feather-W
•
0
0
votes
2
replies
261
views
15 hours ago by
Sudip
•
0
0
votes
2
replies
503
views
2
votes
4
replies
1.4k
views
0
votes
0
replies
713
views
0
votes
1
reply
795
views
0
votes
0
replies
1.2k
views
updated 5 hours ago by
Ram
43k
•
written 4.0 years ago by
getanid123
•
0
0
votes
0
replies
1.7k
views
updated 5 hours ago by
Ram
43k
•
written 5.4 years ago by
baldissera152
▴
10
1
vote
2
replies
1.9k
views
updated 5 hours ago by
Ram
43k
•
written 6.5 years ago by
Alternative
▴
270
0
votes
1
reply
1.8k
views
updated 5 hours ago by
Ram
43k
•
written 6.6 years ago by
boymin2020
▴
80
2
votes
3
replies
3.0k
views
updated 5 hours ago by
Ram
43k
•
written 6.9 years ago by
endikavarela
•
0
0
votes
0
replies
2.0k
views
updated 5 hours ago by
Ram
43k
•
written 6.9 years ago by
endikavarela
•
0
3
votes
4
replies
3.4k
views
0
votes
2
replies
2.8k
views
updated 5 hours ago by
Ram
43k
•
written 7.0 years ago by
endikavarela
•
0
0
votes
0
replies
1.9k
views
updated 5 hours ago by
Ram
43k
•
written 7.1 years ago by
rahel14350
▴
40
0
votes
0
replies
1.9k
views
1
vote
3
replies
4.1k
views
0
votes
3
replies
3.0k
views
updated 5 hours ago by
Ram
43k
•
written 8.9 years ago by
siddharth.patel.153
•
0
Recent Locations •
All
Russia, 2 minutes ago
Stamford, Connecticut, 4 minutes ago
United States, 6 minutes ago
Palau, 10 minutes ago
India, 11 minutes ago
Russia, 18 minutes ago
United States, 19 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Recent Replies
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Traffic: 2052 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6