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9 results • Page
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4
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52
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I need help with a methyl array data analysis
methyl_array
DMPs
DMRs
beta_value
r
1 hour ago by
Ahmad
▴ 10
0
votes
0
replies
36
views
Error in download library file in expression console software
expression
microarray
console
3 hours ago by
Mohammad
• 0
0
votes
4
replies
153
views
Demultiplexing bam file
demultiplexing
bam_file
Iontorrent
updated 4 hours ago by
GenoMax
129k • written 10 hours ago by
hasani.iut6
▴ 60
1
vote
2
replies
137
views
DEgs RNAseq
RNAseq
4 hours ago by
Juan
• 0
0
votes
0
replies
88
views
Different alternatives for downloading GWAS summary statistics en masse
GWAS
download
data
19 hours ago by
Vincent Laufer
★ 2.8k
0
votes
1
reply
109
views
problem of Global Biobank Meta-analysis Initiative
GWAS
updated 2 hours ago by
Fabio Marroni
★ 3.0k • written 1 day ago by
1362321710
• 0
0
votes
1
reply
153
views
Error while running Megahit
Megahit
updated 13 hours ago by
Mensur Dlakic
★ 23k • written 1 day ago by
abhiramiabhirami9072
• 0
0
votes
1
reply
171
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA
Expression
mRNA
updated 20 hours ago by
Vincent Laufer
★ 2.8k • written 1 day ago by
Camilo Andres
▴ 30
1
vote
4
replies
317
views
Pre-processing for Agilent microarray data?
affymetrix
microarray
gene
agilent
rna
updated 5 hours ago by
solarchan7
• 0 • written 5 days ago by
survive
• 0
9 results • Page
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Recent Votes
A: how to count variants par sample per chromosome in a vcf file?
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
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Recent Replies
Comment: best annotation approach for peaks
by
Chironex
▴ 40
Hi, I don't understand why, if I change TSS +1000/-1000 or +3000/-3000 or +10.000/-10.000 the number of regions annotated is the same. More…
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
Thank you, I will check it out
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
I actually have replicates. thank you
Comment: Why are some WES VCFs larger than others?
by
Jeremy Leipzig
21k
"It's not a gvcf with site coverage for the entire cohort, I called the variants myself" This sentence doesn't make sense to me. gVCFs are …
Comment: I need help with a methyl array data analysis
by
Dr William Klubinski
▴ 20
It seems the data appears to be in the beta value format (?), which represents the proportion of methylated probe intensity over the total …
Comment: problem of Global Biobank Meta-analysis Initiative
by
Fabio Marroni
★ 3.0k
Hi, can you please add the link to the page you mentioned? AFAIK some data have restricted access. Maybe full GWAS data belongs to this cat…
Comment: I need help with a methyl array data analysis
by
prasundutta87
▴ 650
Did you come across this? https://www.biostars.org/p/432297/ Regards, Prasun
Comment: Single cell chemistry
by
David
• 0
Unlikely, this data came from a experienced sequencing team, I 'm the inexperienced data analyst. I'm not sure if these samples are 10x, …
Comment: Single cell chemistry
by
David
• 0
Sorry, I did not explain it well. I did it before with other group of samples and different chemistry, so cellranger is working fine in my…
Comment: Do bioinformaticians often break molecular biologists' hearts by being the first
by
jli.ww
• 0
Based on my personal experience as a computational biologist, I was not a co-first author even if I prioritized the candidates from the pub…
Comment: DEgs RNAseq
by
Juan
• 0
Dear Delaney Sullivan, thanks, finlly I did my analisys
Answer: ScRNA data
by
Dr William Klubinski
▴ 20
It seems like your single cell RNAseq data does not already contain the Cell Barcodes or Unique Molecular Identifiers in the standard way -…
Comment: Demultiplexing bam file
by
GenoMax
129k
> Part of the header of the bam file So perhaps there are more samples. https://www.biostars.org/u/21477/: `grep "SM*" header_of_bam`. Is…
Answer: extract all fasta sequence from db v5
by
GenoMax
129k
If you need the fasta sequence download from NCBI here (146 GB zip compressed file) : https://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz
Comment: ScRNA data
by
GenoMax
129k
Is this from a SRA dataset? If so it is possible that you can get the correct information in `DataAccess` tab. Provide the accession number…
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