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Comment: multiqc: group samples by population + boxplot ?
by
Phil Ewels
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1.2k
Yes the documentation for Custom Content is the worst out of all MultiQC docs. I've been intending to rewrite it for a while now. Best bet …
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
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Jeremy Leipzig
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> "Explicit representation: VCF is very explicit about the exact type
> and sequence of variation"
no, tinyliar, it isn't - ambiguous repr…
Comment: Why some insertions are symbolic in ALT column?
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Maxine
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0
sounds great! waiting for your findings~
Comment: Why some insertions are symbolic in ALT column?
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Maxine
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thank you for sharing your experience!
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Medhat
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There is already an article about the topic that was recently published (I was one of the individuals approached to contribute to this arti…
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
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Vincent Laufer
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Apologies - my email address and twitter are listed on my profile page.
Comment: multiqc: group samples by population + boxplot ?
by
Pierre Lindenbaum
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It worked by parsing a first run of multiqc, extract the data from the sanitised data , create a SVG plot with R, include the SVG into a fi…
Comment: Solving environment: failed with initial frozen solve. Retrying with flexible so
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Ahmed
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thanks, bro I get the solve of my problem by installing new environment and reinstalling samtools software again.
Comment: Solving environment: failed with initial frozen solve. Retrying with flexible so
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Ahmed
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Thanks for telling me that, and i apologize for bad explanation because I am beginner user with the site!
Comment: amrfinder not working on loop?
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155k
what is the output of the following commands:
ls -lah '/home/bvs/neelam/AMRFINDER_hypo/hypothetical_analysis/P_aeruginosa_RP73.fasta'
…
Comment: amrfinder not working on loop?
by
GenoMax
130k
> Cannot open file
> '/home/bvs/neelam/AMRFINDER_hypo/hypothetical_analysis/P_aeruginosa_RP73.fasta'
Looks like either the file path is in…
Answer: Solving environment: failed with initial frozen solve. Retrying with flexible so
by
Ram
39k
1. `bioconda` is a conda channel, not a command. I'm surprised it executes some sort of binary - what is the output of `alias bioconda` and…
Comment: Solving environment: failed with initial frozen solve. Retrying with flexible so
by
Ram
39k
Use proper tags - in your previous post, you pasted the question text in the tag field and here, your tag is `nothing`. Use relevant tags (…
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