updated 2 hours ago by
Ram
40k
•
written 4 days ago by
iftikharmaryam123
•
0
0
votes
5
replies
409
views
1
vote
4
replies
240
views
2
votes
4
replies
128
views
10 minutes ago by
camillab.
▴
130
1
vote
3
replies
135
views
updated 1 hour ago by
ATpoint
76k
•
written 1 day ago by
omer.shomrat
•
0
1
vote
2
replies
89
views
2
votes
2
replies
111
views
updated 53 minutes ago by
biofalconch
▴
970
•
written 17 hours ago by
Mehwish
•
0
0
votes
1
reply
1.6k
views
updated 2 hours ago by
Ram
40k
•
written 7.3 years ago by
gerrychang1985
▴
40
1
vote
1
reply
979
views
0
votes
1
reply
53
views
updated 2 hours ago by
Ram
40k
•
written 3 hours ago by
edus_bioinfo
▴
40
0
votes
1
reply
42
views
0
votes
1
reply
41
views
updated 1 hour ago by
fracarb8
★
1.2k
•
written 3 hours ago by
dalibenam64
•
0
0
votes
0
replies
63
views
0
votes
0
replies
37
views
0
votes
0
replies
164
views
0
votes
0
replies
10
views
1 hour ago by
Fabio_bie88
•
0
0
votes
0
replies
41
views
Recent Votes
Recent Locations •
All
Italy, 1 minute ago
Norway, 6 minutes ago
India, 9 minutes ago
Seattle, WA USA, 10 minutes ago
United States, 11 minutes ago
EUA, 11 minutes ago
Memphis, TN, 12 minutes ago
Recent Awards •
All
Popular Question to
adeizadavid
▴
10
Popular Question to
dec986
▴
370
Popular Question to
arriyaz.nstu
▴
30
Popular Question to
gyspace
•
0
Popular Question to
amy__
▴
150
Recent Replies
Comment: Filter transcription factors
by
Chris
▴
180
Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
Comment: Filter transcription factors
by
GenoMax
134k
Thanks for the link. OP does not mention if the data is human though.
Answer: Visualize where kmers are on a reference genome
by
Alex Reynolds
35k
Make a bigBed file: https://www.biostars.org/p/9546293/
Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/…
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴
130
great! thank you very much!
Answer: Filter transcription factors
by
jared.andrews07
★
15k
[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
Comment: Filter transcription factors
by
Ram
40k
What have you tried? Have you looked at GO annotations?
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴
10
yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format.
Thank you very muc…
Comment: Integrated Seurat object change name of the two conditions
by
Amitm
★
2.2k
Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do
# Assuming a seurat obj. c…
Comment: Low Alignment rate
by
biofalconch
▴
960
Yeap, you can sample your reads with `seqtk` like this:
seqtk sample -s100 read2.fq 100 > Sample.fq
Take a couple and run them throug…
Answer: obtaining circular RNAs' sequences from circBase
by
Barry Digby
★
1.2k
You won't find them on circBase.
circAtlas has the mature spliced sequence available. You can [search for circRNAs](https://ngdc.cncb.a…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
Ram
40k
\#TIL mambaforge - better than continuum's conda images I'm guessing?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
arriyaz.nstu
▴
30
If the laptop doesn't support WSL2, then will the Docker (with linux) work?
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴
130
thanks but my metadata looks different from yours. Will it work even there are not the same "structure"?
or…
Answer: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
Docker is great, I use it daily since you're independent of the host computer and can share and pull the images via DockerHub. It's also gr…
Traffic: 4338 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6