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161 results • Page
2 of 4
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Views
Votes
Replies
2
votes
2
replies
192
views
bioinformatic analysis protocol performed by CD Genomics
Genomics
analysis
CD
Protocol
updated 4 days ago by
Ram
39k • written 9 days ago by
linnet.roque6
▴ 10
1
vote
2
replies
199
views
hisat2 Error 137
hisat2
RNA-seq
5 days ago by
Forough
▴ 10
0
votes
2
replies
254
views
How do I calculate differential expression for RNA-seq values with the "limma" package and the "ebayes" function?
differential-expression
TPM
GSEA
PANDA
2 days ago by
John
• 0
0
votes
2
replies
237
views
Correct way to remove Nextera adapters from ITS sequences
adapters
ITS
trimmomatic
4 days ago by
mattze731
▴ 10
0
votes
2
replies
187
views
Blast reads classification
NGS
magicblast
blast
updated 2 days ago by
Ram
39k • written 2 days ago by
Giulia.cosenza
▴ 80
0
votes
2
replies
777
views
Error in mvnX when running processSamples.R of OncoCNV
variant-calling
oncocnv
cnv
updated 4 days ago by
Ram
39k • written 3.5 years ago by
mwarrier
• 0
0
votes
2
replies
952
views
error while executing panX script (KeyError: 'db_xref').
linux
python
genome
biopython
updated 3 days ago by
Ram
39k • written 2.8 years ago by
Kumar
▴ 110
0
votes
2
replies
251
views
[python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must be integers)
TypeError
python
offtopic
updated 3 days ago by
Ram
39k • written 7 weeks ago by
probioquestioner
• 0
1
vote
2
replies
378
views
If I execute "AddOrReplaceReadGroups" on a sorted and duplicate-marked .bam file, do I have to re-sort and re-mark duplicates?
picard
AddOrReplaceReadGroups
bam
read-groups
updated 1 day ago by
Ram
39k • written 2 days ago by
javiflaja
• 0
0
votes
2
replies
104
views
amrfinder not working on loop?
amrfinderplus
updated 10 hours ago by
Pierre Lindenbaum
155k • written 10 hours ago by
Sapphire
• 0
1
vote
2
replies
234
views
phage genome submission in ncbi genebank
phage
table2asn
ncbi
3 days ago by
tahsinkhan570
• 0
0
votes
2
replies
167
views
Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
hg38
fasta
hg19
chainfile
2 days ago by
berndmann
▴ 10
0
votes
2
replies
1.7k
views
How to handle NaN in emmax Kinship matrix?
GWAS
SNP
updated 3 days ago by
Thu
• 0 • written 5.1 years ago by
CWesse
• 0
0
votes
2
replies
357
views
BedGraph to bigWig
bigWig
BedGraph
Galaxy
ATAC-seq
updated 3 days ago by
Ram
39k • written 5 months ago by
abhay.kanodia
▴ 10
0
votes
2
replies
194
views
What does "OS_CNSR" and "PFS_CNSR" mean?
survival
cancer
r
3 days ago by
JACKY
▴ 100
0
votes
2
replies
159
views
How to deal with SRA file without .SRA
SRA
1 day ago by
Andy
▴ 50
2
votes
2
replies
398
views
General Tips On Using Optimal Alignment Flags For Specific Data
bowtie2
alignment
bwa
updated 1 day ago by
Ram
39k • written 3.1 years ago by
blake.mcmurray
• 0
0
votes
2
replies
204
views
Samtools index and sambamba-depth error?
linux
samtools
indexing
sambamba
updated 2 days ago by
jkbonfield
★ 1.0k • written 17 days ago by
MobiusT
▴ 10
0
votes
2
replies
254
views
featurecounts not working on mirbase annotation file
usegalaxy
miRNA-seq
5 days ago by
demoraesdiogo2017
▴ 90
1
vote
2
replies
216
views
Combination of ROC CURVE
roccurve
R
AUC
6 days ago by
Maria17
▴ 20
0
votes
2
replies
313
views
too many zeros in 16S rRNA amplicon sequencing data
16S
rRNA
4 days ago by
zhangdengwei
▴ 190
0
votes
2
replies
155
views
Visualizing several genomes/plasmids in a single figure
visualization
2 days ago by
blur
▴ 270
1
vote
2
replies
525
views
How to mine plant-inducible promoter (PIP) box from Xanthomonas genus genome?
assembly
gene
genome
next-gen
updated 5 days ago by
Ram
39k • written 3.6 years ago by
Kumar
▴ 110
0
votes
2
replies
824
views
Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user su…
protein-structure
pymol
protein
pdb
python
1 day ago by
Aatif Hashmi
• 0
1
vote
1
reply
162
views
UCSC genome browser
Genome-browser
shannon-entropy
updated 2 days ago by
Ram
39k • written 2 days ago by
Lkhagvadulam
• 0
0
votes
1
reply
868
views
deeptools plotHeatmap gives blurry pixelated image
computeMatrix
plotHeatmap
deeptools
ATAC-seq
updated 3 days ago by
Ram
39k • written 2.4 years ago by
Himanshu C
• 0
1
vote
1
reply
131
views
Plotting GO enrichment DATA
R
GO
enrichment-analysis
updated 2 days ago by
Ram
39k • written 2 days ago by
hellokwmin
• 0
0
votes
1
reply
402
views
pal2nal -nogap -nomismatch options not working
pal2nal
updated 3 days ago by
Marie
• 0 • written 6 months ago by
pkfsantos
• 0
2
votes
1
reply
1.1k
views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation
lncRNA
microarray
probe
updated 1 day ago by
Ram
39k • written 3.0 years ago by
daphneolivia39
▴ 20
0
votes
1
reply
620
views
novel miRNA naming(annotation)
snp
RNA-Seq
genome
miRNA
updated 10 hours ago by
Ram
39k • written 2.5 years ago by
zahidhussaindogar113
• 0
1
vote
1
reply
137
views
switching from illumination to NEB prep kits
NEB
WGS
WES
illumina
updated 3 days ago by
GenoMax
130k • written 3 days ago by
lait
▴ 170
1
vote
1
reply
1.9k
views
RStudio Cloud : Problem in Package Installing
RStudio
Bioconductor
updated 1 day ago by
Ram
39k • written 3.1 years ago by
Rishabh Jha
• 0
0
votes
1
reply
710
views
Is there bioinformatics tool to check cross hybridization between primers and probes?
primer
cross-hybridisation
pcr
updated 3 days ago by
Tawny
▴ 180 • written 2.7 years ago by
Pramod Shinde
• 0
1
vote
1
reply
1.4k
views
How to analyze DNA data with UMI
next-gen-sequencing
umi
updated 3 days ago by
Ram
39k • written 3.2 years ago by
deniselavezzari
• 0
0
votes
1
reply
105
views
What are your preferred programs for processing DNA long reads? (de novo assembly)
de
novo
long
assembly
reads
updated 6 hours ago by
Medhat
9.6k • written 8 hours ago by
ashleymb1116
• 0
0
votes
1
reply
494
views
Prediction of lnRNA interaction with all posible miRNA in Humans.
lnRNA
miRNA
RNA-Seq
RNA
updated 1 day ago by
Ram
39k • written 3.0 years ago by
Talarash0
• 0
0
votes
1
reply
144
views
How to remove cloning vector sequence from bacterial assembled genome?
assembly
removal
bacterial
genome
vector
updated 2 days ago by
GenoMax
130k • written 2 days ago by
mathavanbioinfo
▴ 70
0
votes
1
reply
161
views
Pairwise Alignment
Pairwise-Alignment
updated 5 days ago by
Ram
39k • written 6 days ago by
Fatemeh
• 0
0
votes
1
reply
717
views
MMSplice score interpretation
mmsplice
splice-effect-prediction
updated 3 days ago by
Ram
39k • written 2.7 years ago by
Augusta
▴ 30
0
votes
1
reply
392
views
How to quantification proteomics data
proteomics
updated 5 days ago by
eqoa45
• 0 • written 19 months ago by
LeeLee
▴ 10
0
votes
1
reply
183
views
Information on sequin RNA spike in standards
Sequin
Spike-in
RNA-seq
updated 3 days ago by
ATpoint
73k • written 5 days ago by
akainth
▴ 10
0
votes
1
reply
132
views
Alternative To interactions comparison in limma in DESeq2
DESeq2
interactions
updated 3 days ago by
ATpoint
73k • written 3 days ago by
f2ff7a46
• 0
0
votes
1
reply
154
views
DESeq2 for different design and normalized counts
DESeq2
log2foldchange
updated 3 days ago by
ATpoint
73k • written 3 days ago by
t.ru
▴ 20
0
votes
1
reply
132
views
CIBERSORT Error: File not found
CIBERSORT
updated 3 days ago by
ATpoint
73k • written 4 days ago by
jcara514
• 0
0
votes
1
reply
124
views
What is the possibility of Depth (DP) being higher than the coverage
GATK
DP
Coverage
Depth
HaplotypeCaller
updated 3 days ago by
seidel
11k • written 3 days ago by
dare_devil
★ 3.1k
1
vote
1
reply
134
views
snps from empty well, Illumina Sequencing
Illumina
SNP
sequencing
updated 3 days ago by
GenoMax
130k • written 3 days ago by
saint-even
• 0
1
vote
1
reply
141
views
Filtering content in heatmap to highest values
R
heatmap
ggplot2
22 hours ago by
cthangav
▴ 50
0
votes
1
reply
63
views
How to write a Python program that takes the sequences.fasta file and writes N single-sequence FASTA files, called sequence{number}.fasta, each one c…
fasta
python
sequence
updated 3 hours ago by
Pierre Lindenbaum
155k • written 3 hours ago by
Ειρήνη
• 0
0
votes
1
reply
906
views
Strange output from Homer findPeaks
homer
atac-seq
updated 3 days ago by
Ram
39k • written 3.5 years ago by
fr
▴ 200
0
votes
1
reply
181
views
Error occured at the PHG imputation step: allele in genotype not in the variant context
PHG
Imputation
PracticalHaplotypeGraph
Haplotype
updated 2 days ago by
lcj34
▴ 230 • written 5 days ago by
xeod21
• 0
161 results • Page
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what is the output of the following commands: ls -lah '/home/bvs/neelam/AMRFINDER_hypo/hypothetical_analysis/P_aeruginosa_RP73.fasta' …
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