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150 results • Page
1 of 3
Sort: Votes
Rank
Views
Votes
Replies
7
votes
7
replies
4.4k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 1 day ago by
Ram
39k • written 4.4 years ago by
stu111538
▴ 80
5
votes
4
replies
1.5k
views
Detection of DE genes among different tissues of an organism during time - RNA seq
detection
DE-genes
multi-treatments
time-series
updated 1 day ago by
Ram
39k • written 6.9 years ago by
statfa
▴ 720
4
votes
4
replies
337
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
updated 1 day ago by
Joe
21k • written 5 days ago by
antoine.fauchois92
▴ 20
4
votes
7
replies
2.2k
views
low bootstrap value?
phylogeny
genome
alignment
updated 12 hours ago by
Ram
39k • written 4.0 years ago by
Kumar
▴ 100
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 6 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
3
votes
9
replies
1.9k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 6 hours ago by
Pegasus
▴ 90 • written 3.6 years ago by
mnazir
▴ 10
3
votes
16
replies
9.9k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 1 day ago by
Ram
39k • written 4.2 years ago by
Star
▴ 60
2
votes
0
replies
723
views
Why are there multiple bax/fastq files associated with my PacBio run?
genome
PacBio
WGS
sequencing
updated 1 day ago by
Ram
39k • written 4.0 years ago by
nickvpinkham
▴ 20
2
votes
6
replies
1000
views
Time series RNA seq design query
RNA-seq
time-series
deseq2
updated 1 day ago by
Ram
39k • written 18 months ago by
kra277
• 0
2
votes
3
replies
690
views
Including bioinformatics into an agriculture/horticulture dissertation project
agrobioinformatics
plant-gene-analysis
updated 1 day ago by
Ram
39k • written 4.1 years ago by
cipri91rusu
• 0
2
votes
5
replies
390
views
Cutadapt error: too many parameters.
cutadapt
parallel
bash
1 day ago by
DanielEB_fisk
• 0
2
votes
2
replies
767
views
Final year project query
project
updated 6 days ago by
Ram
39k • written 4.5 years ago by
talhar123456
• 0
1
vote
1
reply
2.6k
views
Comparing time series expression data
time-series
gene-expression
updated 1 day ago by
Ram
39k • written 5.8 years ago by
The
▴ 180
1
vote
2
replies
238
views
highlight regions in a dot-plot?
figure
dotplot
alignment
synteny
6 days ago by
Buffo
★ 2.2k
1
vote
0
replies
1.2k
views
Align two single cell experiments
R
single-cell
updated 6 days ago by
Ram
39k • written 4.5 years ago by
elb
▴ 230
1
vote
2
replies
253
views
Abyss taking a Long time to run
abyss
assembly
genome
fastq
5 days ago by
Maliha
▴ 20
1
vote
1
reply
1.3k
views
Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash
Shell
HISAT2
updated 5 days ago by
Ram
39k • written 4.3 years ago by
RNAseqer
▴ 240
1
vote
0
replies
215
views
miRDeep2 installation showing "ln: failed to create symbolic link './randfold': File exists" error.
miRDeep2
updated 1 day ago by
Ram
39k • written 2 days ago by
Supernova
• 0
1
vote
4
replies
1.5k
views
Time series event recurrence comparison
recurrence
time-series
updated 1 day ago by
Ram
39k • written 6.7 years ago by
Nicolas Rosewick
10k
1
vote
0
replies
249
views
How to assess which cell population is most affected by treatmant in single cell rna seq data?
transcriptomics
single-cell
RNA
DEG
5 days ago by
abbas89
▴ 10
1
vote
4
replies
345
views
Pre-processing for Agilent microarray data?
affymetrix
microarray
gene
agilent
rna
updated 3 days ago by
solarchan7
• 0 • written 8 days ago by
survive
• 0
1
vote
7
replies
5.6k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 2 days ago by
dare_devil
★ 3.1k • written 5.3 years ago by
win
▴ 940
1
vote
1
reply
97
views
mitochondrial genome, SRA PacBio sequencing.
Mitochondrial
PacBio
SRA
Mitogenome
updated 19 hours ago by
GenoMax
129k • written 20 hours ago by
hashim.rana11
• 0
1
vote
1
reply
113
views
including samples for which group is unknown to help adjust for another variable
TCGA
design
RNA-Seq
deseq2
updated 6 hours ago by
Vincent Laufer
★ 2.8k • written 21 hours ago by
pilargmarch
▴ 80
1
vote
1
reply
3.1k
views
Problem with PGDSpider v 2.1.0.2
alignment
updated 12 hours ago by
sackettl
▴ 20 • written 6.9 years ago by
maria.segovia.ramirez
▴ 10
1
vote
3
replies
155
views
To call variants can I use my aligned WGS data as a reference genome
VCF
samtools
reference
genome
updated 13 hours ago by
GenoMax
129k • written 14 hours ago by
mls
• 0
1
vote
2
replies
219
views
Create clustered bar chart in R
R
ggplot
visualization
6 days ago by
Prangan
▴ 20
1
vote
3
replies
57
views
BioInformatics, Software
BioInformatics
Learning
Softwares
1 hour ago by
hashim.rana11
• 0
1
vote
1
reply
222
views
DownsampleSam
picard
DownsampleSam
updated 4 days ago by
Pierre Lindenbaum
154k • written 4 days ago by
mathalfilip
• 0
1
vote
0
replies
444
views
Using STAR SJ.out.tab file to identify novel ncRNAs
time-course
RNA-seq
ncRNA
STAR
updated 1 day ago by
Ram
39k • written 17 months ago by
jennifer.conrad84
▴ 10
1
vote
2
replies
181
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
23 hours ago by
Pegasus
▴ 90
1
vote
5
replies
3.6k
views
Time-series or pairwise comparison EdgeR - what's more suited?
DGE-analysis
Time-series
pairwise
updated 1 day ago by
Ram
39k • written 6.7 years ago by
Biogeek
▴ 470
1
vote
2
replies
252
views
DEgs RNAseq
RNAseq
3 days ago by
Juan
• 0
1
vote
3
replies
754
views
Stratify phylogeny based on variables - e.g. which ST are represented by high % males
phylogeny
statistics
updated 5 days ago by
Ram
39k • written 4.3 years ago by
kalfsnes
▴ 10
1
vote
1
reply
163
views
Import Pymol into Python Script
Pymol
python
updated 6 days ago by
Wayne
★ 1.8k • written 6 days ago by
jdrohan
• 0
1
vote
0
replies
76
views
Linear models with limma: coefficients not estimatable, are the others OK?
limma
15 hours ago by
fr
▴ 200
1
vote
3
replies
693
views
Regular Expression for conversion
Linux
grep
updated 1 day ago by
Joe
21k • written 19 months ago by
shabbas12
▴ 10
1
vote
10
replies
2.5k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 5 days ago by
Ram
39k • written 4.2 years ago by
Kumar
▴ 100
1
vote
5
replies
2.3k
views
Calculating distance matrix of RNA-seq data
Dynamic-Time-Warping
R
time-series
updated 1 day ago by
Ram
39k • written 5.2 years ago by
fi1d18
★ 4.2k
1
vote
4
replies
166
views
Filter VCF file for variant alleles
VCF
variants
bcftools
vcftools
updated 13 hours ago by
Ram
39k • written 15 hours ago by
miguellarrazlopezdenovales
• 0
1
vote
3
replies
125
views
How to get a comperative result of 2 bed files?
bam
cnv
bed
updated 2 hours ago by
Pierre Lindenbaum
154k • written 1 day ago by
herh
• 0
1
vote
0
replies
85
views
Resequencing data of pangenome
NGS
PanGenome
Resequence
updated 1 day ago by
Ram
39k • written 1 day ago by
bioinfo223
▴ 10
0
votes
2
replies
210
views
BCR/TCR analysis using target capture sequencing data
capture
ngs
TCR
BCR
1 day ago by
J.F.Jiang
▴ 900
0
votes
2
replies
238
views
Error in download library file in expression console software
expression
microarray
console
1 day ago by
Mohammad
• 0
0
votes
1
reply
40
views
ggsave() bug in ggplot2?
ggplot2
ggsave
updated 48 minutes ago by
barslmn
★ 1.5k • written 1 hour ago by
Medeea
• 0
0
votes
1
reply
235
views
problem of Global Biobank Meta-analysis Initiative
GWAS
updated 3 days ago by
Fabio Marroni
★ 3.0k • written 4 days ago by
1362321710
• 0
0
votes
4
replies
786
views
Detecting Biomarkers from Time Series Gene Epression data
Time-Series
Gene-Expression
Biomarkers
updated 1 day ago by
Ram
39k • written 3.1 years ago by
donnieDarko
• 0
0
votes
0
replies
796
views
Simulating Time Course RNA-Seq Data With Polyester
Time-Course
RNA-Seq
updated 1 day ago by
Ram
39k • written 4.0 years ago by
eashby47
▴ 10
0
votes
4
replies
269
views
I need help with a methyl array data analysis
methyl_array
DMPs
DMRs
beta_value
r
3 days ago by
Ahmad
▴ 10
0
votes
2
replies
139
views
sorting BAM file
BAM
updated 1 day ago by
ATpoint
72k • written 1 day ago by
Mohammad Amin
• 0
150 results • Page
1 of 3
Recent Votes
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Comment: BioInformatics, Software
Answer: How to calculate kinship matrix table from vcf file
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Your post is badly formatted, you should enhance the presentation. I do not understand your question because you created geneExpMatrix1 and…
Answer: Single Cell Rna Seq Using BD Rhapsody
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129k
See answer here: https://www.biostars.org/p/9562237/#9562240 I don't think you can do this on Galaxy.
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129k
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Can you run the command `file Figure1.jpg` and post the output?
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Hi William , Thank you for the explanation, From VCF should i omit variants with `"/"` and keep ones with phased `"|"` for further annotati…
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https://bio.tools/ is a great website indexing software used in bioinformatics.
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Pierre Lindenbaum
154k
This is just too broad. what did you find so far ?
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You can use the vcftools relatedness2 module. Which implements the method describes in the paper: https://academic.oup.com/bioinformatics/a…
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