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2 days ago by
DKA
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updated 2 days ago by
DKA
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written 2 days ago by
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updated 1 day ago by
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written 4.8 years ago by
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1 day ago by
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1 day ago by
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written 23 hours ago by
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written 6.6 years ago by
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written 6.9 years ago by
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updated 20 hours ago by
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written 7.0 years ago by
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updated 20 hours ago by
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written 7.1 years ago by
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updated 20 hours ago by
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written 4.0 years ago by
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written 8.9 years ago by
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written 5.4 years ago by
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Recent Replies
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Enrique
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Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
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The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
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Thank you, I added 'accurate' now ;)
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Guys, just use `samtools sort` which won't get you into trouble with any of that.
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I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
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For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
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it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
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I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
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thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with
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will look into that. Thank you very much
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