0
votes
3
replies
705
views
0
votes
1
reply
95
views
0
votes
2
replies
115
views
updated 1 hour ago by
barslmn
★
1.8k
•
written 16 hours ago by
PoscaXVIII
•
0
0
votes
3
replies
184
views
updated 27 minutes ago by
fracarb8
★
1.2k
•
written 1 day ago by
dalibenam64
•
0
0
votes
0
replies
6
views
10 minutes ago by
kirillkirilenko
▴
20
0
votes
4
replies
84
views
0
votes
0
replies
118
views
0
votes
1
reply
164
views
0
votes
2
replies
235
views
0
votes
11
replies
731
views
6 days ago by
evmae
•
0
0
votes
0
replies
181
views
5 days ago by
juliviglino
•
0
0
votes
5
replies
357
views
0
votes
1
reply
202
views
0
votes
1
reply
381
views
0
votes
0
replies
362
views
0
votes
3
replies
731
views
0
votes
1
reply
757
views
0
votes
7
replies
786
views
0
votes
1
reply
904
views
0
votes
0
replies
595
views
0
votes
1
reply
217
views
0
votes
1
reply
209
views
0
votes
1
reply
199
views
0
votes
0
replies
171
views
5 days ago by
Ahmed
•
0
0
votes
0
replies
163
views
0
votes
0
replies
339
views
updated 4 days ago by
Pierre Lindenbaum
157k
•
written 5 days ago by
nonaddldy
▴
10
0
votes
1
reply
208
views
0
votes
0
replies
155
views
updated 4 days ago by
Ram
40k
•
written 4 days ago by
Ahmed.waraky
▴
10
0
votes
0
replies
139
views
0
votes
13
replies
563
views
0
votes
0
replies
152
views
updated 3 days ago by
4galaxy77
2.8k
•
written 4 days ago by
shakyaram079
•
0
0
votes
2
replies
269
views
0
votes
4
replies
465
views
updated 3 days ago by
Jeremy Leipzig
21k
•
written 4 days ago by
Can Abdullah
•
0
0
votes
0
replies
169
views
Recent Votes
Recent Locations •
All
India, just now
Australia, 2 minutes ago
Germany, 4 minutes ago
Norway, 5 minutes ago
India, 8 minutes ago
Sweden, 11 minutes ago
Cambridge, MA, 11 minutes ago
Recent Awards •
All
Supporter to
Jack Tierney
▴
350
Popular Question to
derealme
•
0
Scholar to
Radu Tanasa
▴
60
Popular Question to
bharata1803
▴
550
Recent Replies
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
GenoMax
134k
This may be one of those things that just happens to be a one-time thing with whatever was going on with this run. Was this sample pooled w…
Comment: ncbi error report log for validate fastq issue
by
GenoMax
134k
Can you provide details of what you are doing and the commands you are using?
Comment: Fetch Fastq files directly for SRA data
by
GenoMax
134k
> fetch fastq files for SRA data hosted by NCBI from AWS data exchange
Please provide an example of a SRA accession where you are encount…
Comment: How the first sequencing template removed in pair end sequencing
by
GenoMax
134k
Moving this to an answer since there is a link for a paper. Things could have changed as @rfran010 says but this may be the closest we will…
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
Asaf
10k
What machine? (Nextseq? Novaseq?) what library prep method?
Comment: How to determine the total count for each gene in lymphotype B
by
fracarb8
★
1.2k
If you want the average expression, you should look at `AverageExpression` from seurat which returns the average instead of the sum. `Avera…
Answer: Fetch Fastq files directly for SRA data
by
Umer
▴
50
You can also use **[Grabseqs][1]**.
Easiest way is to use it with anaconda as **conda install -c louiejtaylor grabseqs**
But you have…
Answer: chromosome location
by
Umer
▴
50
What you can do is use **SnapGene**
1. Download the genome (fasta file)
2. Load it into Snapgene
3. Find gene locations based on the …
Comment: Troubles launch IGV on Linux(Debian)
by
barslmn
★
1.8k
Your log seems fine.
Could you add the results of these commands?
- Which version of debian are you on?
```
lsb_release -c
`…
Comment: How to plot coverage and depth statistics of a bam file
by
jl19
•
0
Hi William,
I was trying to use bam2plot you have developed. It was installed on a python evnviroment python version 3.11.
The installat…
Comment: Help writing code for a question on my homework
by
Joe
21k
This isn't really the right place for this question.
Please ask this as a separate new question, but only if it is bioinformatics related.
Comment: How to determine the total count for each gene in lymphotype B
by
dalibenam64
•
0
thank you very much for your response I'm really grateful !!
but I'm still confused because for example for patients I have 2 replicates…
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
eggrandio
▴
40
But shouldn't quality drop at both 3'ends and not just on the left one?
Comment: Sequence quality drops in the 3' end of the left sequence in paired end. What co
by
ATpoint
77k
https://www.biostars.org/p/91624/
Comment: to annotate BEDPE files
by
Lhl
▴
760
is this what you are looking for?
https://github.com/imgag/ngs-bits/blob/master/doc/tools/BedpeGeneAnnotation.md
Traffic: 1871 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6