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Recent Replies
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extract the vcf as a tab delimited file, something like (not tested)
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> genome sequences of two different strains of yeast
Are they the same species?
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Hi [AK][1],
I downloaded the KO.keg file. I was wondering what tool(s) you used to generate the "KO.tsv" file as you showed here. Thanks.
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I think that is an alternative to a synteny analysis, but I only know liftover in terms of annotations. OP asks for "coordinates between th…
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would something like liftover not be recommended? honest question
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That's good. But I still suspect this data might be really difficult to analyse. I have a handful of suggestions I would do to assess wheth…
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One gene might not be enough data to "cluster" based on expression. Unless I'm missing something, that would just be breaking a single cont…
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Yes, I performed ribosome depletion using an RNAse H based method.
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that's great to hear. one "proxy" for interactive is looking at the JS based tools, many are web based and interactive as a result. I have …
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I don't have a suggestion for low yield DE analyses, but I am curious about the samples. Did you conduct any ribo-depletion steps prior to …
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It sounds like you are looking for synteny between the two genomes. I'm assuming they are assembled, but that may not be the case. If so, […
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Why don't you just plot it on your UMAP If it is specific to one cluster/sub-population you should get a relatively high expression in that…
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