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158 results • Page
2 of 4
Sort: replies
Rank
Views
Votes
Replies
2
votes
2
replies
625
views
Batch correction for DE analysis
batch-correction
mRNA
RNA-seq
DEGs
MDSplot
updated 3 days ago by
Ram
43k • written 2.6 years ago by
Yoonji
▴ 10
0
votes
2
replies
1.0k
views
proportional hazard assumption was not satisfied for a covariate
hazard-ratios
Cox-model
survival
updated 2 days ago by
Ram
43k • written 4.3 years ago by
akutasame
▴ 40
0
votes
2
replies
214
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
2 days ago by
DKA
▴ 40
0
votes
2
replies
184
views
Bedmethyl file format
bedmethyl
methylation
updated 2 days ago by
GenoMax
141k • written 2 days ago by
njornet
▴ 20
1
vote
2
replies
239
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 2 days ago by
Ram
43k • written 2 days ago by
aniigodwinn
• 0
3
votes
2
replies
1.2k
views
DESeq2 design and Batch effects
RNA-Seq
batch-effect
DESeq2
updated 2 days ago by
Ram
43k • written 4.4 years ago by
baldissera152
▴ 10
0
votes
2
replies
327
views
How can I solve this error?
metal
1 day ago by
22211020193
• 0
0
votes
2
replies
287
views
GSEA analysis in R
GSEA
R
Arabidopsis
1 day ago by
Sudip
• 0
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 1 day ago by
Ram
43k • written 6.5 years ago by
Alternative
▴ 270
0
votes
2
replies
2.8k
views
RNA-seq unbalanced batch effect correction
limma
RNA-Seq
edgeR
batch-effect
updated 1 day ago by
Ram
43k • written 7.0 years ago by
endikavarela
• 0
0
votes
2
replies
520
views
autodockvina
python
python3
autodock
updated 1 day ago by
Ram
43k • written 3 months ago by
iamsmor
• 0
0
votes
2
replies
414
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
1 day ago by
航太郎
• 0
0
votes
2
replies
272
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
22 hours ago by
Ashok
• 0
0
votes
2
replies
278
views
python file for coding potential calculator
cpc2.py
22 hours ago by
Ashok
• 0
0
votes
2
replies
298
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
20 hours ago by
Ashok
• 0
3
votes
2
replies
270
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
12 hours ago by
joe
▴ 510
0
votes
2
replies
307
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
11 hours ago by
_quantum_girl_
▴ 10
0
votes
2
replies
160
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
3 hours ago by
rheab1230
▴ 140
0
votes
1
reply
136
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 9 hours ago by
GenoMax
141k • written 9 hours ago by
bioyas
▴ 10
0
votes
1
reply
1.8k
views
Advice required for remove batch effect which perfectly collinear with contrast of interest
RNA-seq
batch-effect
updated 1 day ago by
Ram
43k • written 6.6 years ago by
boymin2020
▴ 80
0
votes
1
reply
160
views
Could you please assist in identifying this cluster?
single-cell
updated 10 hours ago by
Ram
43k • written 12 hours ago by
Kazo
• 0
1
vote
1
reply
161
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 4 days ago by
GenoMax
141k • written 4 days ago by
eesiribloom
▴ 80
0
votes
1
reply
1.3k
views
About BatchQC packages error
Batch-effect
R
updated 2 days ago by
Ram
43k • written 6.0 years ago by
Jun
• 0
0
votes
1
reply
2.8k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 2 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
1
reply
234
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 2 days ago by
GenoMax
141k • written 2 days ago by
ycts
• 0
0
votes
1
reply
172
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 4 days ago by
bk11
★ 2.3k • written 4 days ago by
sinhas
• 0
1
vote
1
reply
318
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
9 hours ago by
renan.igor
• 0
0
votes
1
reply
190
views
merging Seurat objects after SCT
Seurat
SCT
updated 4 days ago by
Ram
43k • written 4 days ago by
michelle.swarovski
• 0
0
votes
1
reply
812
views
Bulk RNAseq MACS Sort Quality Contamination
EdgeR
Batch-effect
RNA-Seq
updated 1 day ago by
Ram
43k • written 3.7 years ago by
jordan15
• 0
0
votes
1
reply
160
views
Freyja plot error
Freyja
updated 2 days ago by
Ram
43k • written 2 days ago by
Adyasha
• 0
1
vote
1
reply
186
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
4 days ago by
CTLong
▴ 110
0
votes
1
reply
1.2k
views
Controlling for batch effect in SNP-based PCA
whole-genome
PCA
batch-effect
SNP
updated 2 days ago by
Ram
43k • written 4.7 years ago by
Ace
▴ 90
1
vote
1
reply
655
views
Save experiment with batch effects - Protein microarray
statistics
protein-array
batch-effect
updated 3 days ago by
Ram
43k • written 4.4 years ago by
s.lima.diogenes
▴ 10
0
votes
1
reply
171
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 4 days ago by
GenoMax
141k • written 4 days ago by
haiying.kong
▴ 360
0
votes
1
reply
393
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 1 day ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 2 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
1
reply
827
views
How to compare differentially expressed genes among different affymatrix dataset
microarray
batch-effect
R
updated 2 days ago by
Ram
43k • written 4.8 years ago by
Calangoa
▴ 30
1
vote
1
reply
158
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 3 days ago by
dsull
★ 5.8k • written 3 days ago by
niruf
• 0
0
votes
1
reply
1.2k
views
Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
random-effects
RNA-Seq
batch-effect
updated 2 days ago by
Ram
43k • written 6.7 years ago by
Dipro
• 0
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva
microarrays
batch-effect
updated 2 days ago by
Ram
43k • written 6.8 years ago by
ATCG
▴ 380
1
vote
1
reply
205
views
Retrieve a % coverage for each transcript
RNA-seq
updated 2 days ago by
Ram
43k • written 2 days ago by
jammydodger123456
▴ 40
0
votes
1
reply
169
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 2 days ago by
DKA
▴ 40 • written 2 days ago by
james.melhorn
• 0
0
votes
0
replies
145
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
1 day ago by
P.
• 0
0
votes
0
replies
68
views
Chemical structure validation
structure
cap
validation
metabolite
9 hours ago by
Rodolfo Adrián
• 0
0
votes
0
replies
135
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 1 day ago by
Ram
43k • written 1 day ago by
bioinfo223
▴ 10
0
votes
0
replies
123
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
1 day ago by
enferdeflame
• 0
0
votes
0
replies
131
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 1 day ago by
Ram
43k • written 1 day ago by
Javier
• 0
0
votes
0
replies
124
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 1 day ago by
Ram
43k • written 1 day ago by
samuelkalandarov2002
• 0
0
votes
0
replies
127
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
4 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
2.0k
views
NOISeq Batch Correction to RNA-seq data
Batch-effect
RNA-Seq
ARSyNseq
limma
NOISeq
updated 1 day ago by
Ram
43k • written 6.9 years ago by
endikavarela
• 0
158 results • Page
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Answer: Duplicate marking, read names, and the SRA
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Normalized how?
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If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
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>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
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Comment: what's the genomic location and name of gene responsible for orange and black pa
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Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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