just now by
2317711200
•
0
0
votes
3
replies
47
views
0
votes
0
replies
29
views
0
votes
0
replies
26
views
1
vote
1
reply
103
views
0
votes
0
replies
66
views
12 hours ago by
cogen859
•
0
0
votes
3
replies
122
views
0
votes
0
replies
59
views
1
vote
2
replies
110
views
3
votes
1
reply
95
views
updated 13 hours ago by
Ram
38k
•
written 15 hours ago by
e.r.zakiev
▴
30
0
votes
0
replies
63
views
15 hours ago by
Maria17
▴
10
1
vote
1
reply
80
views
0
votes
0
replies
59
views
16 hours ago by
hla_help
•
0
0
votes
0
replies
61
views
1
vote
4
replies
172
views
2
votes
2
replies
142
views
1
vote
3
replies
159
views
updated 23 hours ago by
Pierre Lindenbaum
153k
•
written 1 day ago by
qstefano
▴
20
0
votes
1
reply
123
views
0
votes
2
replies
2.7k
views
1
vote
2
replies
179
views
0
votes
0
replies
86
views
1 day ago by
hellokwmin
•
0
0
votes
0
replies
98
views
0
votes
0
replies
98
views
0
votes
5
replies
255
views
0
votes
1
reply
125
views
0
votes
0
replies
79
views
7
votes
7
replies
507
views
0
votes
0
replies
77
views
1
vote
4
replies
223
views
0
votes
0
replies
80
views
0
votes
0
replies
115
views
20 hours ago by
dzisis1986
▴
60
0
votes
0
replies
114
views
0
votes
0
replies
79
views
0
votes
0
replies
100
views
0
votes
0
replies
99
views
0
votes
0
replies
117
views
0
votes
0
replies
124
views
0
votes
0
replies
120
views
0
votes
1
reply
172
views
updated 2 days ago by
cmdcolin
★
2.9k
•
written 2 days ago by
hafiz.talhamalik
▴
350
1
vote
0
replies
137
views
updated 2 days ago by
Ram
38k
•
written 2 days ago by
Vincent Laufer
★
2.6k
0
votes
1
reply
159
views
2 days ago by
Jewahir
•
0
0
votes
0
replies
125
views
0
votes
0
replies
108
views
0
votes
1
reply
153
views
updated 2 days ago by
GenoMax
127k
•
written 2 days ago by
omargmc.tak
•
0
0
votes
0
replies
98
views
0
votes
0
replies
98
views
0
votes
0
replies
97
views
updated 2 days ago by
Ram
38k
•
written 2 days ago by
mixmatchey
•
0
0
votes
0
replies
104
views
0
votes
6
replies
389
views
0
votes
0
replies
135
views
0
votes
0
replies
122
views
3 days ago by
zihanss
•
0
Recent Votes
Recent Locations •
All
France, just now
South Korea, 3 minutes ago
China, 4 minutes ago
Tübingen, 5 minutes ago
South Korea, 5 minutes ago
rome, 6 minutes ago
Netherlands, 7 minutes ago
Recent Awards •
All
Popular Question to
Bogdan
★
1.3k
Popular Question to
pavelasquezv
▴
50
Popular Question to
Anand Rao
▴
550
Scholar to
andres.firrincieli
3.2k
Popular Question to
chaco001
▴
10
Recent Replies
Answer: Extract data from Signac RegionMatrix?
by
Chironex
▴
40
object@assays$ATAC@positionEnrichment$my_region_matrix
and also
object@assays$ATAC@positionEnrichment$my_region_matrix$condit…
Comment: Any tips in landing a bioinformatic job?
by
ATpoint
70k
Great answer, narrowing it down the the key points!
Comment: How to remove unknown batch-batch effects from GEO datasets
by
ATpoint
70k
The righthand plot might be totally fine once you remove that one outlier on the left, try that first. The batch effect manifesting along P…
Comment: using CITE-seq data to cluster single cells
by
ATpoint
70k
If it is really just two genes then why not just plotting logcounts of gene1 vs logcounts of gene2 as in a FACS scatter plot and see whethe…
Comment: How to remove unknown batch-batch effects from GEO datasets
by
2317711200
•
0
As a beginner, I hope to receive professional answers. If necessary, I can provide rewards and R code.
Answer: Align miRNA library (small RNA-seq) without trimming
by
ATpoint
70k
For miRNA you should trim the data to the actual expected miRNA length (20-something bp, I would need to look up the exact value). Reason i…
Comment: boxplot issue
by
ATpoint
70k
Please get used to make your question reproducible and precise, meaning provide example data and reduce code to a minimum.
Answer: Total No of Genes of GENCODE Release 43
by
ATpoint
70k
As I said, I assume that you are doing something on old/overwritten variables or a wrong GTF. This is how it is:
a<-rtracklayer::i…
Answer: Any tips in landing a bioinformatic job?
by
Vincent Laufer
★
2.6k
Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created?
For myself, if …
Comment: Align miRNA library (small RNA-seq) without trimming
by
Paola
▴
10
Hi Ming
Untrimmed reads have 76bp in average.
Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
★
2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
•
0
Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
by
rebeliscu
▴
50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
by
cfos4698
▴
730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
Answer: PTM-aware protein folding / docking
by
Mensur Dlakic
★
23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
Traffic: 2282 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6