just now by
Manuel
•
0
0
votes
1
reply
7
views
0
votes
4
replies
145
views
updated 35 minutes ago by
GenoMax
136k
•
written 6 hours ago by
syedahumairagillani
•
0
0
votes
0
replies
48
views
8 hours ago by
junhuili
•
0
1
vote
1
reply
987
views
updated 8 hours ago by
charles.feigin
•
0
•
written 6 weeks ago by
xinrantian
▴
20
0
votes
0
replies
55
views
0
votes
0
replies
68
views
14 hours ago by
George X.
•
0
0
votes
1
reply
104
views
0
votes
0
replies
64
views
17 hours ago by
EK
•
0
0
votes
1
reply
109
views
1
vote
1
reply
107
views
0
votes
1
reply
116
views
0
votes
2
replies
163
views
0
votes
0
replies
66
views
1
vote
4
replies
179
views
0
votes
0
replies
82
views
0
votes
1
reply
142
views
0
votes
1
reply
323
views
0
votes
1
reply
127
views
updated 21 hours ago by
Ram
41k
•
written 1 day ago by
francesco.degiglio
•
0
0
votes
0
replies
87
views
0
votes
0
replies
76
views
0
votes
0
replies
73
views
3
votes
1
reply
133
views
updated 21 hours ago by
Ram
41k
•
written 1 day ago by
Confused_human
▴
20
0
votes
3
replies
178
views
0
votes
0
replies
85
views
0
votes
0
replies
90
views
0
votes
1
reply
142
views
2
votes
4
replies
249
views
updated 17 hours ago by
Ram
41k
•
written 1 day ago by
luckyday1661
•
0
0
votes
0
replies
107
views
updated 1 day ago by
Ram
41k
•
written 1 day ago by
boone5jones
•
0
0
votes
0
replies
92
views
0
votes
2
replies
195
views
0
votes
0
replies
90
views
0
votes
4
replies
255
views
0
votes
1
reply
139
views
1 day ago by
enriquesan
•
0
0
votes
0
replies
79
views
0
votes
1
reply
133
views
1 day ago by
aanchal.yadav
•
0
0
votes
0
replies
84
views
2 days ago by
Assa Yeroslaviz
★
1.8k
0
votes
1
reply
98
views
2 days ago by
Umer
▴
50
1
vote
3
replies
191
views
3 hours ago by
cucindarko51
•
0
2
votes
2
replies
201
views
0
votes
4
replies
639
views
2
votes
5
replies
226
views
0
votes
2
replies
514
views
updated 2 days ago by
Zhenyu Zhang
★
1.1k
•
written 13 months ago by
billyK
•
0
1
vote
3
replies
329
views
0
votes
0
replies
112
views
4
votes
2
replies
265
views
0
votes
1
reply
212
views
0
votes
0
replies
111
views
0
votes
0
replies
124
views
0
votes
2
replies
1.5k
views
0
votes
3
replies
809
views
updated 4 days ago by
viveksomya123
•
0
•
written 2.3 years ago by
shrinka.genetics
▴
20
Recent Votes
Recent Locations •
All
France, just now
Boston, just now
Italy, just now
United States, 2 minutes ago
Thailand, 3 minutes ago
United States, 4 minutes ago
Germany, 6 minutes ago
Recent Awards •
All
Popular Question to
kirillkirilenko
▴
20
Teacher to
rpolicastro
12k
Popular Question to
bioinfo
▴
60
Commentator to
Devon Ryan
104k
Popular Question to
lsy9
▴
20
Popular Question to
Sam
▴
300
Popular Question to
A_heath
▴
160
Recent Replies
Comment: Very low successfully assigned alignments with feature counts
by
GenoMax
136k
Is the genome/annotation from the same source i.e. Ensembl or so it appears?
Comment: Calculate GC content for entire chromosome
by
ATpoint
78k
What does this do? It's not documented well and does not work for me in terms of, it produces no output:
cat foo.fa
>chr1
GCGC…
Comment: Need help to find FASTA sequence from dbSNP
by
GenoMax
136k
Did you not see the last part in my comment above about how to get the sequence?
Comment: Need help to find FASTA sequence from dbSNP
by
syedahumairagillani
•
0
Thank you for your response.
Actually I am looking for fasta sequence of SNP as I shared via image, rather than just location. Would you p…
Answer: Calculate GC content for entire chromosome
by
colindaven
5.8k
In the meantime there is also
seqtk gc
https://github.com/lh3/seqtk
seqtk gc
Usage: seqtk gc [options] <in.fa>
…
Comment: Building reference dbSNP file using WGS samples
by
analyst
▴
10
I have employed your above suggested approach for BQSR (latter one).
I will try former approach too (that does not require reference vcf fi…
Comment: An issue with gtf file (ballgownrsem)
by
cucindarko51
•
0
Thank you! After using this tool, I figured out that **ballgownrsem** can be run successfully only with GFF files.
Answer: Execute R command on specific termimal
by
ATpoint
78k
This is not how HPCs work. Things do not happen automatically and independent of the job scheduler.
If you want to work interactively o…
Comment: Need help to find FASTA sequence from dbSNP
by
GenoMax
136k
Using [**EntrezDirect**][1] you can find the location of this SNP:
$ esearch -db snp -query rs1815739 | esummary | xtract -pattern Doc…
Comment: Building reference dbSNP file using WGS samples
by
analyst
▴
10
For variant calling I followed following steps:
**Step 1**
I first made a vcf file to be used for quality score recalibration later
> c…
Answer: How to use Nextflow to call scripts from different environments?
by
ATpoint
78k
You can specify conda environments and containers directly in the modules, see for example:
https://github.com/nf-core/modules/blob/master…
Comment: Issues while running blastx
by
GenoMax
136k
> ~/Downloads/uniprot_sprot.dat
`dat` files are not blast index ready. You should download the `fasta` format file and create your own bla…
Comment: Strandedness of RNA-seq results
by
charles.feigin
•
0
Hi, coming here for the same reason. Libraries prepared with the Illumina Stranded mRNA Prep kit (dUTP-based).
In hisat2 with --rf I get <…
Traffic: 2441 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6