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1,000 results • Page
1 of 20
Sort: replies
Rank
Views
Votes
Replies
16
votes
38
replies
15k
views
Differential gene Analysis by Limma
Limma
Microarray
R
updated 10 months ago by
Ram
38k • written 8.1 years ago by
Mo
▴ 920
23
votes
22
replies
37k
views
6 follow
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking …
plink
vcf
fam
gatk
vcftools
updated 3 months ago by
Nicole
• 0 • written 4.9 years ago by
gaelgarcia
▴ 250
5
votes
22
replies
6.4k
views
SVM for classified gene expression data
R
svm
microarray
updated 7 months ago by
Ram
38k • written 7.2 years ago by
Shaurya Jauhari
▴ 50
2
votes
22
replies
1.1k
views
6 follow
Find ~1 Mb regions of genome that are shared by two or more WGS samples?
pedigree
linkage
genetics
5 months ago by
Joel Wallenius
▴ 100
0
votes
21
replies
1.5k
views
HTSeq-Count: no_feature too high?
htseq-count
4 months ago by
sea.joson
▴ 10
5
votes
20
replies
3.2k
views
DiscoSnp Segmentation fault
snp
discosnp
updated 5 months ago by
Ram
38k • written 7.6 years ago by
Hans
▴ 130
8
votes
20
replies
1.8k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 10 months ago by
Ram
38k • written 4.6 years ago by
Bara'a
▴ 270
18
votes
19
replies
1.6k
views
6 follow
Extremely important marker gene has many reads based on IGV viewer but no quantified reads
rna-seq
sequencing
igv
alignment
next-gen
updated 3 months ago by
Ram
38k • written 4.2 years ago by
rbkh09
• 0
7
votes
19
replies
2.3k
views
mapping script process sleeping on server.
alignment
updated 10 months ago by
Ram
38k • written 8.0 years ago by
lvogel
▴ 30
0
votes
19
replies
1.0k
views
scatterplot in R
microarray
expression
gene
updated 5 months ago by
Ram
38k • written 5 months ago by
bioinformatics
▴ 10
2
votes
18
replies
1.7k
views
I need help in this
gene
weblems
alignment
updated 7 months ago by
Ram
38k • written 7.2 years ago by
efosa15
• 0
4
votes
18
replies
3.3k
views
Significance of reads mapping to Viruses - FusionCatcher
RNA-Seq
virus
reads
fusion
updated 7 months ago by
Ram
38k • written 7.3 years ago by
Joel TM
▴ 60
3
votes
18
replies
892
views
6 follow
What sequencing/alignment artifact is this?
variants
mutect
sequencing
alignment
mitochondria
4 months ago by
lacb
▴ 120
0
votes
17
replies
4.1k
views
Finding True SNPs after hard filtering on GATK
SNP
updated 6 months ago by
Ram
38k • written 7.5 years ago by
jigarnt
▴ 30
0
votes
16
replies
3.6k
views
Count read with summarizeOverlaps result 0 for all sample
RNA-Seq
updated 8 months ago by
Ram
38k • written 7.9 years ago by
bharata1803
▴ 550
0
votes
16
replies
1.4k
views
How to convert ncbi gff file to ensembl gff format
file
gff
6 months ago by
yoser4
▴ 10
4
votes
16
replies
1.1k
views
How to extract intron counts from total RNA Sequencing?
featurecounts
RNAseq
htseq
STAR
4 months ago by
barrypraveen
▴ 100
0
votes
15
replies
3.0k
views
Identify genes in a tophat aligned bam/sam file
blast
alignment
rna-seq
gene
updated 12 weeks ago by
Ram
38k • written 7.8 years ago by
gchaves
• 0
19
votes
15
replies
25k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 7 months ago by
Ram
38k • written 7.2 years ago by
dam4l
▴ 180
0
votes
15
replies
1.3k
views
Chromosome accession numbers correspond to which chromosome?
bam
chromosome
bed
4 months ago by
amy__
▴ 50
7
votes
15
replies
4.7k
views
6 follow
blastn error - NCBI C++ Exception
assembly
blast
alignment
updated 11 months ago by
lieven.sterck
14k • written 24 months ago by
sunnykevin97
▴ 970
3
votes
15
replies
1.2k
views
Overlapping regions in a BED file
regions
BED
Sequence
exons
annotation
8 months ago by
Matej
• 0
6
votes
15
replies
939
views
The Best Cloud Solution For Genomics
cloud
data-sharing
genomics
workflow
updated 8 months ago by
Ram
38k • written 9 months ago by
davidmaimoun
▴ 50
2
votes
14
replies
796
views
Annotating the multi sample vcf file
vcf
annotation
3 months ago by
Peerzada
• 0
0
votes
14
replies
1.0k
views
Error using HTSEq_count
HTSeq
python
9 weeks ago by
felipead66
▴ 110
5
votes
14
replies
1.1k
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
updated 6 weeks ago by
Jeremy Leipzig
21k • written 7 weeks ago by
Emoji
• 0
9
votes
14
replies
3.7k
views
Explanation on Paired end single index for RNA seq
RNA-Seq
updated 11 months ago by
Ram
38k • written 8.2 years ago by
hothriananya
▴ 70
0
votes
14
replies
3.1k
views
ABySS - Out of memory using 64 cores (520GB)
abyss
assembly
updated 5 months ago by
Ram
38k • written 7.6 years ago by
wjar6718
• 0
5
votes
14
replies
1.4k
views
Removing sequences that contain deletion mutations in them from a fasta file (with python)
python
7 months ago by
Mustafa
▴ 10
1
vote
14
replies
1.4k
views
Counts all read zero after alignment?
alignment
rna-seq
updated 9 months ago by
Ram
38k • written 19 months ago by
tul66893
• 0
6
votes
14
replies
2.6k
views
mapping RNAseq reads to a genbank isoforme that is not in Reference Annotation
RNA-Seq
sequence
cufflinks
new isoform in rnaseq
updated 8 months ago by
Ram
38k • written 7.1 years ago by
fta.mirzadeh
• 0
0
votes
14
replies
1.0k
views
Corrplot heatmap crunched up and unreadable
Corrplot
heatmap
9 months ago by
aropri
▴ 110
8
votes
13
replies
747
views
Mapped reads not mapping to a real sequence?
bam
sam
samtools
kallisto
5 weeks ago by
txema.heredia
▴ 70
6
votes
13
replies
600
views
Error with STAR
STAR
updated 11 days ago by
Ram
38k • written 13 days ago by
Chris
▴ 70
0
votes
13
replies
631
views
Use bcftools isec to find denovo mutations
mutations
denovo
updated 28 days ago by
Ram
38k • written 29 days ago by
anasjamshed
▴ 120
2
votes
13
replies
956
views
How to compare differential expression of same genes between two groups?
expression
differential
updated 12 months ago by
swbarnes2
13k • written 12 months ago by
mark.pekarsky
▴ 20
1
vote
13
replies
2.5k
views
Pooled / polyploid samples
discosnp
updated 5 months ago by
Ram
38k • written 7.6 years ago by
tkitapci
▴ 60
6
votes
13
replies
5.9k
views
DESeq2 and edgeR - no agreement between results
RNA-Seq
edgeR
DESeq2
updated 7 months ago by
Ram
38k • written 7.3 years ago by
ilyco
▴ 60
2
votes
13
replies
1.4k
views
[RNAseq, featureCounts] Can paired-end data be processed as single end?
paired-end
RNAseq
featureCounts
7 months ago by
Texx
• 0
12
votes
13
replies
2.1k
views
Gene Expression and Systems Biology (homework)
gene
homework
updated 3 months ago by
Ram
38k • written 7.7 years ago by
sarathkurichiyil
• 0
1
vote
13
replies
2.3k
views
If GI number in list1 is present in genbank file, make new list and append location information
python
genbank
biopython
updated 10 months ago by
Ram
38k • written 8.1 years ago by
pawlowac
▴ 80
1
vote
13
replies
902
views
Samtools indexing problem during bwa mem alignment
Alignment
bwa
samtools
9 months ago by
GlouGlou
• 0
4
votes
13
replies
24k
views
6 follow
[main_samview] fail to read the header from sample.bam
alignment
updated 8 months ago by
Qboy
• 0 • written 5.0 years ago by
sambioinfo2018
▴ 20
1
vote
13
replies
805
views
RNAseq for DE purpose
RNAseq
updated 6 weeks ago by
swbarnes2
13k • written 6 weeks ago by
m.habib
• 0
7
votes
13
replies
3.6k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2
RNA-Seq
Multiplex-families
updated 11 months ago by
Ram
38k • written 8.1 years ago by
alesssia
▴ 580
1
vote
13
replies
979
views
Ete3 build - ValueError: Error parsing Phyml result
ete3
ete3toolkit
ete
phyml
build
updated 4 months ago by
Matthias Zepper
3.4k • written 4 months ago by
nitinra
▴ 50
1
vote
13
replies
3.2k
views
Clarification on the “orientation” of chromosomal rearrangements in mate-pair or paired-end sequencing
sequencing
alignment
Assembly
updated 11 months ago by
Ram
38k • written 8.1 years ago by
alec_djinn
▴ 380
1
vote
12
replies
3.3k
views
why different outputs with applying various extracting fasta sequences tool, which one correct!?
alignment
sequencing
RNA-Seq
updated 5 months ago by
Ram
38k • written 7.6 years ago by
seta
★ 1.7k
2
votes
12
replies
545
views
how to align an intron from a complex
genomic
updated 9 months ago by
WouterDeCoster
47k • written 9 months ago by
Bioinfo
• 0
1
vote
12
replies
3.5k
views
Can anyone explain the weird Insert Size HIstogram
RNA-Seq
alignment
sequencing
updated 10 weeks ago by
ATpoint
70k • written 5.5 years ago by
SMILE
▴ 170
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