0
votes
6
replies
423
views
0
votes
10
replies
354
views
0
votes
5
replies
262
views
2
votes
4
replies
236
views
0
votes
2
replies
195
views
updated 7 hours ago by
Ram
43k
•
written 1 day ago by
v.berriosfarias
▴
140
0
votes
2
replies
140
views
0
votes
1
reply
113
views
updated 22 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
benguyarenbeyaz98
•
0
0
votes
1
reply
107
views
updated 7 hours ago by
Ram
43k
•
written 18 hours ago by
ahmad.sajad4541
•
0
0
votes
0
replies
98
views
0
votes
1
reply
95
views
updated 11 hours ago by
Sofia
•
0
•
written 15 hours ago by
mawigoj318
•
0
0
votes
1
reply
80
views
updated 3 hours ago by
Pierre Lindenbaum
161k
•
written 6 hours ago by
DKA
▴
40
0
votes
0
replies
77
views
16 hours ago by
salias
•
0
0
votes
0
replies
69
views
updated 7 hours ago by
Ram
43k
•
written 17 hours ago by
newuser2024
•
0
0
votes
0
replies
68
views
updated 7 hours ago by
Ram
43k
•
written 12 hours ago by
glaciya2018
•
0
0
votes
0
replies
60
views
0
votes
0
replies
60
views
0
votes
0
replies
51
views
9 hours ago by
hemantcnaik
•
0
0
votes
0
replies
37
views
Recent Votes
Recent Locations •
All
USA, just now
Japan, 1 minute ago
United States, 2 minutes ago
South Korea, 3 minutes ago
United Kingdom, 5 minutes ago
Singapore, 6 minutes ago
United States, 7 minutes ago
Recent Awards •
All
Popular Question to
camillab.
▴
160
Popular Question to
Simone
▴
10
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
daffodil
▴
10
Popular Question to
Russ
▴
500
Popular Question to
pramach1
▴
40
Popular Question to
Adyasha
•
0
Recent Replies
Comment: Why cd-hit-est not work when sequence identity threshold<0.95？
by
Dateline
•
0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq
by
Kevin Blighe
87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap.
You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies
by
Kevin Blighe
87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue
by
emmanouil.a
▴
120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package
by
Pierre Lindenbaum
161k
duplicate of your previous question: https://www.biostars.org/p/9592646/
why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation
by
Lissa Cruz Saavedra
•
0
Hi
I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file
by
swbarnes2
14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model
by
biochugs
•
0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
by
Jeremy
▴
890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
DKA
▴
40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed)
by
Mensur Dlakic
★
27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
by
Mensur Dlakic
★
27k
It is a good idea, though I don't see how it would work in practice.
I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴
890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/
https://github.com/ruqianl/appendCB may also be useful.
Traffic: 2036 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6