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Why Do I Get A Makeblastdb Error: File Does Not Match Input Format Type, Default Input Type Is Fasta
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Answer: Encountering Error while Running 'make vcf' in Biostar Handbook
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Tully
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@ialbert ,I am deeply immersed in the fog and request the help ,please
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are you sure bedtools can handle the non-standard location of strand information?
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Maybe somebody knows something I don't, but I feel like bedtools should be able to handle your gtf files directly.
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As the error says, the file is not compressed. In linux the file extension is essentially optional. The file could be named `my.vcf.txt` ye…
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You can use NCBI esearch to search the protein names against the structure database to get the PDB IDs, then retrieve the structures.
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Without your actual data, it's hard to assist. I think what you're asking is 'how do I rename the rows of my dataframe(s)'.
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What kind of hardware are you running this on? You need to have the right kind of hardware (multiple CPU's not just cores), MPI libraries a…
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```bash
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Did it affect the bamtofastq output file? if so how did you solve the problem?
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You could try seeing if this fixes your issue with rtracklayer: https://support.bioconductor.org/p/p133244/
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Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
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