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Recent Replies
Comment: Weirdness in annotation (missing allele frequencies)
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Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
Comment: Weirdness in annotation (missing allele frequencies)
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Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
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Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
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> My problem has been with trying to loop the process.
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workflow {
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I see.
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bedtools intersect \
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There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
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This is not the most elegant solution, but it should work with previous suggestions.
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Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
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I figured out how to make it work. The bams have to be comma separated not just by space:
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Comment: Search RCSB with a list of protein names?
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Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
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This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
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