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It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
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Now there is [bed2gff](https://github.com/alejandrogzi/bed2gff), if you want to work only with a gff file!
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now there is also [bed2gff](https://github.com/alejandrogzi/bed2gff) if you want to convert .bed files to .gff3 files!
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Thanks.
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By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
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Correct. Data that went into the assembly.
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