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I tried the commands you recommended in the bash/command line. When I tried `find "${bam_directory}" -type f -name "*.bam" | xargs samtools…
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Can you provide some examples of HUGO ID's you are unable to convert?
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GTF file includes gene models/annotation information.
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The problem here is not the ties, but that your gene IDs in the pathway list (ensemble human genes) does not match the names of the stats v…
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I did not use the space between the `-u` flag and the `-o` flag (the blank line) but I did do what you recommended:
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