Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
526 results • Page
1 of 11
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
17
views
Free/open source 23andme-like analysis
NGS
SNPs
genomics
VCF
52 minutes ago by
joe
▴ 500
0
votes
2
replies
292
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
4 hours ago by
航太郎
• 0
0
votes
0
replies
25
views
Spam:
Free Instagram Likes
Free
Likes
Instagram
4 hours ago by
seo2
0
0
votes
0
replies
57
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
7 hours ago by
rahu
• 0
0
votes
0
replies
60
views
create genewise sync file in popoolation
popoolation
updated 7 hours ago by
GenoMax
141k • written 9 hours ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
183
views
python file for coding potential calculator
cpc2.py
1 hour ago by
Ashok
• 0
0
votes
2
replies
179
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
1 hour ago by
Ashok
• 0
0
votes
2
replies
150
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
1 hour ago by
Ashok
• 0
0
votes
0
replies
70
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 12 hours ago by
Ram
43k • written 12 hours ago by
samuelkalandarov2002
• 0
0
votes
1
reply
144
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
updated 13 hours ago by
Ram
43k • written 13 hours ago by
_quantum_girl_
▴ 10
0
votes
0
replies
74
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 13 hours ago by
Ram
43k • written 13 hours ago by
Javier
• 0
0
votes
0
replies
74
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
13 hours ago by
enferdeflame
• 0
0
votes
0
replies
78
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
9 hours ago by
Chris
▴ 260
0
votes
1
reply
368
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 14 hours ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
3
replies
293
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 5 hours ago by
swbarnes2
14k • written 20 hours ago by
rrehimi
• 0
0
votes
0
replies
91
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 14 hours ago by
Ram
43k • written 20 hours ago by
bioinfo223
▴ 10
0
votes
0
replies
107
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
21 hours ago by
P.
• 0
0
votes
0
replies
107
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
23 hours ago by
ekirsch
• 0
0
votes
1
reply
205
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
updated 3 hours ago by
cmdcolin
★ 3.8k • written 1 day ago by
renan.igor
• 0
0
votes
0
replies
116
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
1 day ago by
synat.keam
▴ 100
0
votes
1
reply
208
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 1 day ago by
GenoMax
141k • written 1 day ago by
ycts
• 0
0
votes
3
replies
364
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
updated 10 hours ago by
GenoMax
141k • written 1 day ago by
Kai Xin
• 0
1
vote
1
reply
186
views
Retrieve a % coverage for each transcript
RNA-seq
updated 1 day ago by
Ram
43k • written 1 day ago by
jammydodger123456
▴ 40
0
votes
2
replies
298
views
How can I solve this error?
metal
1 day ago by
22211020193
• 0
0
votes
0
replies
124
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 1 day ago by
GenoMax
141k • written 1 day ago by
srimmer
• 0
1
vote
2
replies
227
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 1 day ago by
Ram
43k • written 1 day ago by
aniigodwinn
• 0
0
votes
0
replies
251
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
1 day ago by
Ronin
• 0
2
votes
7
replies
658
views
Removing duplicates
duplicates
ONT
minimap2
updated 5 hours ago by
joe
▴ 500 • written 1 day ago by
quentinperriere
• 0
0
votes
1
reply
161
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 1 day ago by
DKA
▴ 40 • written 1 day ago by
james.melhorn
• 0
0
votes
1
reply
150
views
Freyja plot error
Freyja
updated 1 day ago by
Ram
43k • written 1 day ago by
Adyasha
• 0
0
votes
0
replies
119
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
1 day ago by
chemokine-1
▴ 10
0
votes
4
replies
411
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
22 hours ago by
feather-W
• 0
0
votes
2
replies
179
views
Bedmethyl file format
bedmethyl
methylation
updated 1 day ago by
GenoMax
141k • written 1 day ago by
njornet
▴ 20
0
votes
0
replies
128
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
1 day ago by
Ali
• 0
2
votes
4
replies
266
views
SnpEff annotates coding duplication as intronic?
snpeff
1 day ago by
kirill.zaslavsky
• 0
0
votes
2
replies
204
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
1 day ago by
mropri
▴ 150
0
votes
0
replies
122
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
2 days ago by
shasabhi1
• 0
0
votes
0
replies
119
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
2 days ago by
Nishat
• 0
0
votes
0
replies
129
views
what exactly is a k-mer table (remora)?
remora
basecall
2 days ago by
anne
• 0
1
vote
1
reply
154
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 2 days ago by
dsull
★ 5.8k • written 2 days ago by
niruf
• 0
0
votes
0
replies
123
views
GWAS Phenotypes
GWAS
2 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
273
views
GSEA analysis in R
GSEA
R
Arabidopsis
20 hours ago by
Sudip
• 0
0
votes
0
replies
105
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
2 days ago by
QX
• 0
2
votes
5
replies
338
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
1 day ago by
Bikram Kumar
• 0
0
votes
2
replies
225
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 2 days ago by
Ram
43k • written 3 days ago by
David
• 0
1
vote
2
replies
232
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
2 days ago by
bioinfo
▴ 150
0
votes
1
reply
170
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 3 days ago by
bk11
★ 2.3k • written 3 days ago by
sinhas
• 0
0
votes
1
reply
187
views
merging Seurat objects after SCT
Seurat
SCT
updated 3 days ago by
Ram
43k • written 3 days ago by
michelle.swarovski
• 0
0
votes
1
reply
166
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 3 days ago by
GenoMax
141k • written 3 days ago by
haiying.kong
▴ 360
0
votes
2
replies
238
views
RNAseq 1 control 2 different treatment
RNA-seq
2 days ago by
matteo.levorato
• 0
526 results • Page
1 of 11
Recent Votes
Bedtools merge but only if intersection exists
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Recent Locations •
All
United States,
1 minute ago
United States,
1 minute ago
United States,
2 minutes ago
Japan,
2 minutes ago
INBIOSIS,
4 minutes ago
Washington University in St. Louis, MO,
4 minutes ago
Palau,
6 minutes ago
Recent Awards •
All
Popular Question
to
yueli7
▴ 250
Popular Question
to
Chirag Parsania
★ 2.0k
Scholar
to
LChart
3.9k
Scholar
to
swbarnes2
14k
Commentator
to
GenoMax
141k
Centurion
to
jkbonfield
★ 1.2k
Popular Question
to
Randy H
▴ 110
Recent Replies
Comment: Korean human genome reference file
by
SeoGyun
• 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
• 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB
by
航太郎
• 0
Thanks for your guide!
Comment: Removing duplicates
by
joe
▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file
by
swbarnes2
14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you so much
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you very much
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Traffic: 2025 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6