0
votes
0
replies
874
views
0
votes
0
replies
151
views
0
votes
0
replies
159
views
0
votes
0
replies
166
views
0
votes
2
replies
272
views
0
votes
2
replies
265
views
updated 6 days ago by
Raony Guimarães
★
1.3k
•
written 6 days ago by
ThePlaintiff
▴
80
2
votes
8
replies
588
views
5
votes
2
replies
239
views
5 days ago by
Rafael Soler
★
1.2k
1
vote
2
replies
192
views
updated 6 days ago by
WouterDeCoster
47k
•
written 6 days ago by
manaswiniparija3
▴
10
1
vote
0
replies
136
views
0
votes
3
replies
282
views
0
votes
0
replies
108
views
0
votes
0
replies
120
views
7 days ago by
turcoa1
•
0
0
votes
0
replies
124
views
0
votes
2
replies
255
views
0
votes
0
replies
114
views
7 days ago by
andre.arrudalima
▴
30
0
votes
0
replies
107
views
7 days ago by
e.r.zakiev
▴
170
1
vote
4
replies
291
views
5 days ago by
anasjamshed
▴
120
0
votes
0
replies
862
views
0
votes
0
replies
123
views
7 days ago by
biology_inform
▴
50
0
votes
1
reply
133
views
updated 7 days ago by
biofalconch
★
1.1k
•
written 7 days ago by
Emilija
•
0
0
votes
2
replies
198
views
updated 2 days ago by
Arup Ghosh
3.2k
•
written 7 days ago by
vasudhapai
•
0
3
votes
2
replies
233
views
0
votes
0
replies
107
views
7 days ago by
m.t.lorenc
•
0
0
votes
0
replies
120
views
1
vote
2
replies
198
views
0
votes
1
reply
164
views
updated 7 days ago by
andres.firrincieli
3.5k
•
written 8 days ago by
fluentin44
•
0
0
votes
0
replies
118
views
0
votes
0
replies
110
views
1
vote
4
replies
269
views
0
votes
0
replies
112
views
8 days ago by
npb27
•
0
0
votes
0
replies
103
views
0
votes
0
replies
109
views
0
votes
0
replies
165
views
0
votes
0
replies
111
views
0
votes
3
replies
268
views
7 days ago by
m.t.lorenc
•
0
0
votes
6
replies
496
views
0
votes
0
replies
106
views
0
votes
3
replies
326
views
0
votes
0
replies
143
views
0
votes
0
replies
121
views
4
votes
6
replies
376
views
2
votes
1
reply
154
views
0
votes
0
replies
109
views
1
vote
2
replies
256
views
8 days ago by
AS20
▴
10
0
votes
0
replies
108
views
0
votes
0
replies
138
views
9 days ago by
nrqstudent
•
0
0
votes
1
reply
212
views
1
vote
1
reply
193
views
updated 10 days ago by
ATpoint
78k
•
written 10 days ago by
dylannicoembros
•
0
0
votes
0
replies
158
views
updated 10 days ago by
Pierre Lindenbaum
158k
•
written 10 days ago by
iftikharmaryam123
•
0
Recent Votes
Recent Locations •
All
Belgium, just now
Germany, 2 minutes ago
United States, 2 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
India, 5 minutes ago
Republic of Ireland, 6 minutes ago
Recent Awards •
All
Popular Question to
newbee
▴
40
Popular Question to
jrleary
▴
200
Teacher to
Brian Bushnell
19k
Popular Question to
Info.shi
▴
30
Commentator to
JACKY
▴
120
Appreciated to
Jon Binkley
▴
160
Recent Replies
Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
by
DINESHR
•
0
Regarding Diffbind, How does diffbind calculate common peaks with the samples. I'm observing that certain peaks identified as common using …
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
rpolicastro
12k
Assuming Cell Ranger was ran correctly it's unlikely that the sample is useable. It looks like most droplets were probably empty.
Comment: bwa mem hangs after a few thousand reads
by
cee28
▴
30
Here is the output with the "-v 4" flag (not showing all the @SQ comments) :
> @SQ SN:chrUn_GL000214v1 LN:137718 @SQ SN:chrUn_KI270742v1 L…
Answer: Where is the index command?
by
Michael
53k
There is a ready-made package for samtools, simply do
apt install samtools
Also, your screenshot shows you are using the root account…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴
180
Use option `-v` with value of 4 or above to help diagnose the issue:
`-v INT` Control the verbose level of the output. This option has not…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴
180
Cross-posted here: [sequence alignment - bwa mem hangs after a few thousand reads - Bioinformatics Stack Exchange](https://bioinformatics.s…
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT
by
tw_140
•
0
Thank you, I really appreciate your insight! I will look into the dropouts I have.
Comment: Generate Read counts from bam file
by
NextGenSeek
•
0
Are you analysing RNA or DNA heteroplasmy levels?
Comment: What type of cancer did they study in this paper?
by
GenoMax
136k
Perhaps the exact cancer type is not what is important. Looks like they are [**all solid tumors**][1] with a baseline sample and one after …
Comment: p-value combination methods
by
i.sudbery
18k
edgeR *is* an NB-GLM.
The input to NB-GLMs, including edgeR and DESeq is read counts from each sample.
Answer: What type of cancer did they study in this paper?
by
jared.andrews07
★
16k
Cutaneous or ocular melanoma. It's from [this paper](https://aacrjournals.org/cancerimmunolres/article/10/2/162/678013/NKG7-Is-a-T-cell-Int…
Comment: p-value combination methods
by
sehriban.buyukkilic
•
0
its output of edgeR. I'm asking for input of NB-GLM? what should be input of it?
Comment: How do I download a list of genes involved in cellular metabolism (in humans) ba
by
el24
▴
40
Hi @pratik,
Thanks for the helpful solution above. I'm working on a similar task in Mouse species and noticed the CTD database is human-spe…
Comment: Match variants for allele frequency, LD score, and other features
by
Jautis
▴
520
Trying to bump this
Comment: p-value combination methods
by
i.sudbery
18k
The parameters you have here are the *output* of an NB-GLM, not the input to an NB-GLM (most likely edgeR?)
Traffic: 1985 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6