Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
131
views
Dnaplotter
Artemis
1 day ago by
prs
• 0
2
votes
1
reply
193
views
How to create GO Bar Plot using data obtained from DAVID Functional Enrichment Analysis?
Plot
DAVID
R
updated 1 day ago by
Basti
★ 1.4k • written 1 day ago by
Stefanus C.B.
• 0
0
votes
2
replies
190
views
mrbayes segmentation fault
mrbayes
segmentation
fault
11 hours ago by
dgrace999
• 0
0
votes
0
replies
122
views
Obtain the GenomicRanges from segmented CNA data and the corresponding TSS for EnrichedPlot
TSS
GRanges
EnrichedPlot
promoters
GenomicRanges
2 days ago by
melissachuaphd
• 0
0
votes
0
replies
114
views
ChIPseq w/ polyploid genome : Xenopus laevis
chipseq
alignment
xenopus
ploidy
2 days ago by
William
▴ 10
0
votes
0
replies
143
views
Differential (pathways) expression testing using linear model packages in R (Limma & GSVA)
GSVA
limma
R
2 days ago by
Tadeoye
▴ 30
0
votes
0
replies
122
views
How to quantify the expression of CD45 isoforms from bulk RNA-seq data
isoforms
Salmon
RNA-seq
CD45
2 days ago by
eager_underdog
• 0
0
votes
5
replies
301
views
How can I determine the number of detected genes and detected transcripts/isoforms in a BAM file + GTF file?
rnaseq
scRNA-seq
single-cell
genomics
ngs
updated 1 day ago by
GenoMax
127k • written 2 days ago by
O.rka
▴ 650
0
votes
2
replies
199
views
Processing fastqs generated by inDrop protocol
single-cell
rna-seq
indrop
updated 2 days ago by
Ram
38k • written 2 days ago by
bobbybobbobbo
• 0
1
vote
3
replies
254
views
How to extract/find the actual names of the gene_IDs if they are not fully presented in gtf.file, and link them to the Count.matrix
featureCounts
gtf
RNA-Seq
updated 2 days ago by
GenoMax
127k • written 2 days ago by
Pegasus
▴ 80
0
votes
1
reply
177
views
Circos plot
circos
updated 1 day ago by
Fabio Marroni
★ 3.0k • written 2 days ago by
prs
• 0
0
votes
1
reply
120
views
mpileup2sync
mpileup2sync
population2
updated 2 days ago by
Ram
38k • written 2 days ago by
Hayler Edu
▴ 30
0
votes
0
replies
90
views
Number of gigabases necesary for Iso-seq-PacBio
Iso-seq
RNA-Seq
Alternative-Splicing
PacBio
updated 2 days ago by
Ram
38k • written 2 days ago by
Jesús M
• 0
0
votes
2
replies
146
views
Problem with blasting UNMAPPED RNA-seq paired end reads in Jaculus jaculus
RNAseq
jaculus
unmapped
reads
2 days ago by
barbarainb
• 0
0
votes
0
replies
75
views
PGx question regarding RSIDs with more than one variant associated with it
pharmacogenomics
rsid
pgx
2 days ago by
Roy
▴ 10
0
votes
0
replies
97
views
Converting Abricate output (.tsv) to gff3 format
gff3
convert
tsv
Abricate
2 days ago by
ghataksnd
▴ 10
0
votes
0
replies
109
views
samtools mpileup - bases string explanation
samtools
mpileup
2 days ago by
igorm
▴ 20
0
votes
3
replies
226
views
Problem in converting SAM to BAM file by DROP SEQ
SAMtoBAM
updated 2 days ago by
Ram
38k • written 2 days ago by
VANSHIKA
• 0
0
votes
2
replies
186
views
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
vcf.gz
UnicodeDecodeError
ancIBD
2 days ago by
wangjincheng
• 0
0
votes
1
reply
195
views
Error while running Virusfinder
Virusfinder
updated 2 days ago by
Ram
38k • written 2 days ago by
DC
• 0
0
votes
0
replies
141
views
Fine mapping with GWAS
PAINTOR
GWAS
FINE-MAP
POST-GWAS
updated 2 days ago by
Nicolas Rosewick
10k • written 2 days ago by
Swati
• 0
0
votes
0
replies
128
views
How would I assess evolutionary estimates between duplicated vs. non-duplicated genes in PAML?
PAML
3 days ago by
codoncity
• 0
1
vote
3
replies
288
views
FeatureCounts >edgeR > GO
RNA-SEQ
updated 1 day ago by
Basti
★ 1.4k • written 3 days ago by
Pegasus
▴ 80
1
vote
2
replies
243
views
Handling single-sample VCF after haplotypecaller
VCF
3 days ago by
Y.H.P
• 0
0
votes
0
replies
144
views
MethylR on bam files Gives Error
MethylR
bismark
3 days ago by
anasjamshed
▴ 120
0
votes
1
reply
175
views
pyscenic
pyscenic
scenic
12 hours ago by
Andy
▴ 30
1
vote
1
reply
224
views
just one plot appears in the shiny application not all
plot
source
shiny
code
updated 3 days ago by
bkleiboeker
▴ 320 • written 3 days ago by
mrashad
▴ 60
0
votes
0
replies
154
views
Downsample process in ActiveRegion determination (HaplotypeCaller and Mutect2)
Downsample
Mutect2
HaplotypeCaller
3 days ago by
yxwucq
• 0
0
votes
0
replies
220
views
Simes method
simes
method
SNP
R
2 days ago by
Eliza
▴ 10
0
votes
2
replies
304
views
Post-Imputation QC Problem
Imputation
2 days ago by
Jesse
• 0
0
votes
1
reply
236
views
Conformational antigens
Immunoinformatics
updated 5 days ago by
Ram
38k • written 5 days ago by
Mohamed
• 0
0
votes
2
replies
314
views
best practice to choose AF threshold based on population number
VCF
AF
allele-frequency
5 days ago by
prasundutta87
▴ 650
2
votes
5
replies
531
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 1 day ago by
igor
13k • written 5 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
179
views
selection of 2 by 2 Chi-square Test
statistics
Chi-square
updated 5 days ago by
Ram
38k • written 5 days ago by
Binghong
▴ 20
0
votes
0
replies
184
views
Check most expressed isoform of mouse gene in specific tissue
FANTOM
gene-expression
MGI
mouse
updated 5 days ago by
Ram
38k • written 5 days ago by
gspirito
▴ 10
1
vote
0
replies
180
views
gseKEGG with streptomyces coelicolor - No gene can be mapped
streptomyces
KEGG
clusterProfiler
5 days ago by
r.evans2
▴ 10
0
votes
0
replies
248
views
Power calculations for the detection of differentially expressed genes in pseudobulk scRNA-seq data
scRNA-seq
pseudobulk
power
RNA-seq
updated 5 days ago by
Ram
38k • written 5 days ago by
Ali
• 0
2
votes
8
replies
482
views
Depth of Coverage in Mitochondrial Genome with Samtools
samtools
depth-of-coverage
Mitochondrial-genome
3 days ago by
Lida
• 0
0
votes
1
reply
208
views
Genes near SNP within certain window frame and distance
bedops
bedtools
updated 5 days ago by
Ram
38k • written 5 days ago by
waqaskhokhar999
▴ 150
0
votes
0
replies
193
views
95% CI for AUC in R
AUC
R
5 days ago by
dhananya
• 0
0
votes
1
reply
248
views
comparison between STARsolo and cellranger
STARsolo
cellranger
updated 5 days ago by
GenoMax
127k • written 5 days ago by
dalibenam64
• 0
0
votes
1
reply
190
views
building model with lectin array data and patient data
lectin
model
updated 5 days ago by
ATpoint
70k • written 5 days ago by
dharmini1998
• 0
1
vote
1
reply
210
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
updated 5 days ago by
ATpoint
70k • written 5 days ago by
Belanov
▴ 10
0
votes
0
replies
195
views
How to find association between a gene-rsid and AD
association
Loci
LD
AD
6 days ago by
rheab1230
▴ 140
0
votes
2
replies
254
views
Finding repeats in dna sequences
OP
6 days ago by
ojaswinipandey
• 0
0
votes
0
replies
187
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single
integration
cell
DEG
design
analysis
6 days ago by
paria
▴ 70
1
vote
0
replies
151
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
6 days ago by
Hyper_Odin
▴ 280
0
votes
0
replies
123
views
Metatranscriptomics: de novo assembly of mRNA per OTU?
MAGs
no
total
novo
metatranscriptomics
assembly
de
MEGAN
rna
6 days ago by
Maria
• 0
0
votes
3
replies
159
views
A problem about saving Rstudio data matrix
data
Rstudio
matrix
updated 6 days ago by
bkleiboeker
▴ 320 • written 6 days ago by
yoser4
▴ 10
0
votes
0
replies
86
views
How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
taxa
test
Aldex2
of
abundance
Relative
R
6 days ago by
ohtang7
▴ 30
1,000 results • Page
2 of 20
Recent Votes
Answer: Stringtie does not work with NCBI GTF file?
Answer: NCBI's Foreign Contamination Screen (FCS) tool improves the quality of GenBank
A: StringTIe Error: no valid ID found for GFF record
Answer: List of cloud genomics companies
NCBI's Foreign Contamination Screen (FCS) tool improves the quality of GenBank submissions
Comment: Run nextflow sections sequentially
A: Looking For A Way To Count Total Length Of Regions Of Bed File
Recent Locations •
All
United States,
3 minutes ago
Singapore,
6 minutes ago
United States,
6 minutes ago
New Zealand,
6 minutes ago
United States,
7 minutes ago
Australia,
8 minutes ago
United Kingdom,
13 minutes ago
Recent Awards •
All
Popular Question
to
rebeliscu
▴ 50
Commentator
to
iraun
5.9k
Popular Question
to
jms2520
▴ 20
Popular Question
to
MAPK2
▴ 40
Popular Question
to
Maxine
• 0
Scholar
to
Trivas
▴ 680
Teacher
to
Mensur Dlakic
★ 23k
Recent Replies
Comment: SRA Taxonomy Analysis - difference between tables and web
by
Art_SG
• 0
Yes, I sent them a ticket about it already. I will post if have any reasonable response. So far for 70% datasets that I was trying result i…
Comment: How much reads per cell for fusion detection with Nanopore ?
by
dthorbur
▴ 410
Having looked a little more in depth into the requirements of JAFFAL, it's actually not recommended to be used with Nanopore due to the rel…
Comment: Using AWS for Bioinformatics
by
Simon
▴ 10
Thanks for your guidance Mensur, much appreciated
Answer: Astalavista landscape AS gtf file output
by
xizengde
• 0
Hi! I have the same problem. How do you solve the problem finally?
Comment: Using AWS for Bioinformatics
by
Mensur Dlakic
★ 23k
Your posts indicate that you are primarily here to promote your company, which is fine. Rather than posting randomly in threads that are mo…
Comment: How to find promoter sequence of a gene?
by
Mensur Dlakic
★ 23k
Why is it so difficult to provide proper information? Presumably you know that finding promoters in prokaryotes and eukaryotes are two comp…
Comment: Stringtie does not work with NCBI GTF file?
by
Mensur Dlakic
★ 23k
There is a way to delete posts, but there is no need to do it. Just because you found the solution doesn't mean this stops being a problem …
Answer: Using AWS for Bioinformatics
by
Simon
▴ 10
In case you weren't aware, bioinformatics platform technology has moved on quite a bit in recent years so I thought I would point out an al…
Answer: Stringtie does not work with NCBI GTF file?
by
100dustedclays
▴ 10
Is there a way to delete this post? I have found a solution from https://www.biostars.org/p/488062/ NCBI has an extra line in the gtf…
Answer: Bioinformatics Server on AWS
by
Simon
▴ 10
I realize this answer is so late that it is unlikely to be of use to the original poster, but given technology has moved on quite a bit in …
Comment: TSS of protein coding genes
by
ConvolutedGenome
▴ 10
I seee, But consider this scenario: what if a particular transcript of a gene exists as a result of first-exon skipping? As I understood i…
Answer: NCBI's Foreign Contamination Screen (FCS) tool improves the quality of GenBank
by
Mensur Dlakic
★ 23k
I give you guys credit for sharing the tool, as it is always nice to have an option for local runs. Still, a 512 Gb RAM requirement will se…
Comment: how to get to a VCF from bam files
by
Human
• 0
Thanks! I definitely gonna give it a try. Would you also recommend this for my short term success in terms of this task too? I definitely w…
Comment: Run nextflow sections sequentially
by
Raygozak
★ 1.4k
Does the word running has a different meaning of what i'm thinking?
Comment: Run nextflow sections sequentially
by
ATpoint
70k
It answers the question exactly, and I would appreciate a different tone. Consider paying a consultant in case a free online community is n…
Traffic: 2021 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6