Limit : all time
all time today this week this month this year
1,000 results • Page 3 of 20
Sort: Rank
Rank Views Votes Replies
0
votes
2
replies
227
views
Mapping reads to a multifasta reference
multifasta map
updated 11 days ago by 47k • written 11 days ago by • 0
0
votes
0
replies
110
views
Is it valid to use UMI-based analysis pipelines for aptamer-based proteomics
UMI aptamer RNA-seq proteomics
11 days ago by Ali • 0
0
votes
1
reply
222
views
hierarchical clustering heatmap with r
R
updated 11 days ago by 6.0k • written 11 days ago by ▴ 20
0
votes
0
replies
136
views
single cell RNA analysis in python
cell single python
11 days ago by sooni • 0
0
votes
0
replies
136
views
File GTF for Virus
scRNA
11 days ago by Carlos Eduardo • 0
0
votes
0
replies
120
views
How to see gene names in goProfiler2 functional enrichment analysis
goProfiler2 enrichment GO clusterprofiler
11 days ago by Zhujunnn • 0
0
votes
1
reply
190
views
Problems going from biopython motif to logo
logo biopython motif
updated 11 days ago by ▴ 540 • written 11 days ago by • 0
1
vote
7
replies
857
views
Accuracy of Methods for Gene Variant Detection and Quantification: Kallisto Pseudoalignment vs. STAR Alignment
kallisto STAR RNA-seq Transcript_variants
10 days ago by sohail.mbio • 0
4
votes
6
replies
408
views
how to plot SV(structural variants) from many assemblies of a given locus
SV
10 days ago by natalev ▴ 20
1
vote
0
replies
104
views
How to annotate clusters with one cell type?
scRNA Seurat Cluster SingleR annotation
11 days ago by Bioinfo ▴ 20
1
vote
2
replies
204
views
multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
11 days ago by xiaoleiusc ▴ 120
1
vote
3
replies
215
views
Where to upload and store annotated genetic variant data online?
mutation annotated cancer database variant
updated 12 days ago by 129k • written 12 days ago by ▴ 20
0
votes
1
reply
155
views
Diverse sampling from MSA / phylogenetic tree?
clustering proteins sampling alignment msa
updated 10 days ago by ▴ 540 • written 12 days ago by ▴ 40
0
votes
0
replies
118
views
How the "IJC" is calculated in rMATS tool?
Sashimi sequencing alignment rMATS rna-seq
12 days ago by Apex92 ▴ 270
4
votes
8
replies
506
views
Error while running nf-core/rnaseq pipeline
nf-core RNA-seq
5 days ago by eesha28112001 • 0
0
votes
0
replies
127
views
Confused about the GERP++ output
gerp
12 days ago by Doozy • 0
2
votes
6
replies
359
views
Find data-based Gene_IDs for unknown gene_IDs in gtf.file
RNA-SEQ annotation GO-term
6 days ago by Pegasus ▴ 90
0
votes
0
replies
133
views
The non-synonymous/synonymous rate ratio for test in datamonky represents the dn-ds of the entire gene ?
evolution datamonky SLAC Positive selection
12 days ago by ly887554221 • 0
0
votes
0
replies
134
views
Dealing with multiallelic variants in PLINK merge
biobank merge bfile PLINK UK
12 days ago by Lloyd_641 • 0
6
votes
12
replies
549
views
Help with error in cellranger
Cellranger
updated 11 days ago by 129k • written 12 days ago by ▴ 100
1
vote
4
replies
357
views
Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
11 days ago by SushiRoll ▴ 100
0
votes
0
replies
137
views
EIGENSOFT mergeit without family names
mergeit EIGENSOFT familynames
13 days ago by Inez • 0
12
votes
4
replies
487
views
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
genome bed transcript TSS
13 days ago by Rafael Soler ★ 1.2k
1
vote
2
replies
220
views
Building phylogenetic tree accounting for spatial information
BEAST IQ-TREE COVID-19
13 days ago by vembha • 0
0
votes
0
replies
120
views
Error when converting hmmsearch output to gff file
hmmer2gff gff hmmer
13 days ago by v.berriosfarias ▴ 90
0
votes
3
replies
330
views
Merging groups of 1 dataset in R
dataset merge microarray
updated 13 days ago by ★ 1.5k • written 14 days ago by • 0
0
votes
1
reply
221
views
How to convert a GBFF GFF to GTF
scRNA gff gtf
updated 13 days ago by 39k • written 14 days ago by • 0
0
votes
1
reply
220
views
how to input bedpe file in IGV
IGV interaction input bedpe
updated 14 days ago by 154k • written 14 days ago by ▴ 140
0
votes
1
reply
224
views
Metadata for oligo bioconductor package
bioconductor microarray metadata oligo R
updated 13 days ago by ★ 1.5k • written 14 days ago by • 0
0
votes
0
replies
177
views
Reteroviruses in shotgun metgaenome data
genomics Metagenomics Microbial Viruses RNA-Viruses
15 days ago by serene.s • 0
1
vote
1
reply
291
views
Question for 3 prime bias in rna short read and long read (illumina, ont, pacbio)
long short read rna-seq
updated 14 days ago by 129k • written 15 days ago by ▴ 40
0
votes
0
replies
178
views
Questions about using Jellyfish and genomescope with paired end reads?
jellyfish genomescope
15 days ago by asilidae • 0
0
votes
2
replies
290
views
Spatial transcriptome analysis
single_cell transcriptome Seurat spatial_transcriptome RNA-seq
10 days ago by guliasitu40 ▴ 140
0
votes
0
replies
172
views
How do I annotate with the Clingen Canonical Allele Identifiers?
allele vcf clingen
15 days ago by Jeremy Leipzig 21k
1
vote
9
replies
512
views
gene annotation
gtf gene-annotation
updated 15 days ago by 39k • written 16 days ago by • 0
0
votes
0
replies
144
views
VG Giraffe Mapping to a Single Connected Component
graph vg pangenome giraffe
16 days ago by jdru • 0
2
votes
3
replies
368
views
Samtools faidx can't be run in succession on two reference files?
Samtools
14 days ago by DdogBoss • 0
0
votes
0
replies
179
views
PHLAT genotyping with scRNA-seq (10x)
PHLAT scRNA-seq 10x
16 days ago by malonzm1 • 0
0
votes
0
replies
190
views
Sample based on allele frequency matching between two files
linkage
updated 8 days ago by 39k • written 16 days ago by ▴ 20
1
vote
1
reply
231
views
Repbase not installed error while running maker
repbase maker
updated 15 days ago by 39k • written 16 days ago by • 0
2
votes
1
reply
194
views
P values on box plots
sequencing Statistics RNA
updated 16 days ago by ★ 1.5k • written 16 days ago by ▴ 10
0
votes
2
replies
226
views
How to find DNA sequence of a SNP without reference genome? (I have a .vcf file)
vcf SNP reference
16 days ago by Roland ▴ 10
0
votes
4
replies
313
views
csv to custom manifest file
illumina
16 days ago by bioguy24 ▴ 230
0
votes
0
replies
152
views
Create bed file where each column is the number of intersections with another bed file
intersect bedtools
17 days ago by rxs1018 • 0
0
votes
0
replies
121
views
XCMS library not centroid mode
xcms R
17 days ago by t.ru ▴ 20
0
votes
4
replies
260
views
Detect mutations in clonally propagated plants
mutations Illumina clonal-propagation variant-calling
16 days ago by RvV ▴ 10
0
votes
0
replies
118
views
PheWAS - risk/effect allele
GWAS PheWAS Open_Targets_Genetics
17 days ago by MH85 • 0
2
votes
1
reply
195
views
'Seurat' package
Seurat R
updated 17 days ago by 39k • written 17 days ago by • 0
1
vote
2
replies
230
views
`MOFAobject@expectations` is empty list
MOFA2
updated 17 days ago by 39k • written 17 days ago by ▴ 120
0
votes
1
reply
170
views
Can I perform ANOVA test on rlog data of RNA sequencing counts?
rlog ANOVA
updated 17 days ago by 3.3k • written 17 days ago by ▴ 140
1,000 results • Page 3 of 20
Recent Votes
A: extract dendrogram cluster from pheatmap
Answer: Counting intronic reads in bulk RNA-seq
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
Recent Locations • All
Cranfield, just now
Denmark, 2 minutes ago
Bologna, 7 minutes ago
United States, 8 minutes ago
United States, 8 minutes ago
United States, 10 minutes ago
Irbid, 11 minutes ago
Recent Awards • All
Popular Question to Sam ▴ 150
Supporter to arsala521 ▴ 10
Teacher to Leszek 4.2k
Commentator to Gordon Smyth ★ 6.1k
Popular Question to Vincent Laufer ★ 2.8k
Popular Question to beausoleilmo ▴ 530
Popular Question to rbaranikumar • 0
Recent Replies
Comment: Demultiplexing bam file by Pierre Lindenbaum 154k
you don't talk about the size in your question
Comment: Demultiplexing bam file by hasani.iut6 ▴ 60
so why the size of bam file is 40 gig?
Comment: Demultiplexing bam file by Pierre Lindenbaum 154k
> I want to separate every sample I don't understand. In your header there is only one sample : "`13.02.1402_POOL2"`
Comment: Error while running Megahit by Mensur Dlakic ★ 23k
We can't even begin to guess what the problem was without an error message.
Comment: DEgs RNAseq by dsull ★ 4.2k
Is this single-cell RNAseq or non-single-cell RNAseq? For single-cell, you typically don't do standard "differential gene expression analy…
Comment: Counting intronic reads in bulk RNA-seq by dsull ★ 4.2k
Correct, and I agree -- reads lying fully within introns are usually not counted for either single-cell or bulk. Inclusion of introns in a…
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Traffic: 1780 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6