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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
86
views
Something wrong with my code concerning bsseq visualization
bsseq
plotRegion
R
7 days ago by
diqixiaoyaoer
▴ 10
0
votes
0
replies
96
views
How to bifurcate patients into high and low expressing groups for TCGA survival analysis for a gene of interest
Meidan
TCGA
Percentile
Survival
R
7 days ago by
Manav
• 0
1
vote
3
replies
211
views
TSV with multi-allelic sites to VCF
bcftools
updated 7 days ago by
barslmn
★ 1.4k • written 7 days ago by
Christian
▴ 20
0
votes
0
replies
114
views
Spearman correlation rna-seq gene to blood values
spearman
rna-seq
6 days ago by
bas2020
▴ 20
4
votes
3
replies
197
views
Geom bar postive and negative values in a flipped plot
flip_coord
ggplot
geom_bar
6 days ago by
luzglongoria
▴ 40
3
votes
8
replies
310
views
getting coding exon information from Ensembl API
Ensembl
API
updated 7 days ago by
Ram
38k • written 7 days ago by
Nobody
▴ 30
0
votes
0
replies
104
views
displaying results of different RNA-seq projects in R shiny
RNA-seq
shiny
R
7 days ago by
rls_08
▴ 40
2
votes
3
replies
220
views
RNAseq: same reads + more complete scaffold = fewer DEGs?
RNAseq
updated 6 days ago by
Darked89
4.2k • written 7 days ago by
phillip.brassington
▴ 10
0
votes
0
replies
97
views
calc IBS with vcf files with different snfs
IBS
PLINK
6 days ago by
Mali
• 0
0
votes
0
replies
93
views
Hi-C aggregation plot | ARA | PE-Scan
Hi-C
7 days ago by
Argonaut
• 0
1
vote
3
replies
169
views
Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ?
QC
cutadapt
Illumina
trimming
3.4
updated 7 days ago by
GenoMax
127k • written 7 days ago by
Bengisu
• 0
1
vote
3
replies
199
views
What is exactly meant by "GENCODE TSS"?
GENCODE
transcription
annotation
TSS
gene
7 days ago by
ConvolutedGenome
▴ 10
0
votes
3
replies
238
views
SRA Taxonomy Analysis - difference between tables and web
athena
taxonomy
sra
cloud
updated 6 days ago by
GenoMax
127k • written 7 days ago by
Art_SG
• 0
0
votes
0
replies
97
views
inquiry related to Hi-C data download
Hi-C
datasets
human
brain-cortex
interaction
matrix
8 days ago by
rheab1230
▴ 140
3
votes
4
replies
269
views
Creating sample groups from a combination of genes for survival analysis
Survival
7 days ago by
krushnach80
★ 1.1k
3
votes
2
replies
163
views
Power analysis for patient samples
RNA-seq
8 days ago by
aropri
▴ 130
0
votes
2
replies
161
views
OrthoFinder problem
Sub
OrthoFinder
iterative
processes
Bash
7 days ago by
HERMAN
▴ 10
0
votes
1
reply
138
views
Error when using compareCluster from enichment
compareCluster
updated 7 days ago by
Basti
★ 1.4k • written 8 days ago by
jacob
• 0
0
votes
0
replies
98
views
Need Help Scraping MeSH terms from Pubmed
Python
Entrez
Scraping
updated 8 days ago by
Ram
38k • written 8 days ago by
Arnau
• 0
1
vote
1
reply
125
views
NA14622 data for benchmarking
benchmarking
vcf
bed
GiAB
updated 8 days ago by
GenoMax
127k • written 8 days ago by
emmanouil.a
▴ 110
0
votes
2
replies
175
views
How to add gene information below the BSmooth result ?
BSmooth
methylation
DNA
8 days ago by
diqixiaoyaoer
▴ 10
1
vote
1
reply
158
views
Plot in R: Presence of bacteria type A vs bacteria type B in different groups
boxplot
phyloseq
plot
abundance
ggplot2
R
updated 8 days ago by
Basti
★ 1.4k • written 8 days ago by
flourde
• 0
1
vote
5
replies
338
views
Plot heatmap using row_splitting but splitting should based on a column in dataset - ComplexHeatmap
R
row_split
ComplexHeatmap
updated 8 days ago by
Trivas
▴ 720 • written 8 days ago by
TJay
• 0
1
vote
1
reply
144
views
Why GATK is slow with haplotypecalling
GATK
HaplotypeCalling
updated 8 days ago by
Pierre Lindenbaum
153k • written 8 days ago by
rj.rezwan
• 0
0
votes
0
replies
103
views
How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
NGS
bcftools
vcf
phase
8 days ago by
zhangfish
▴ 50
0
votes
0
replies
88
views
Homer annotatePeaks for enrichment analysis
annotatePeaks
homer
DMR
methylation
8 days ago by
Joana
• 0
0
votes
0
replies
129
views
Seurat analysis without ribosomal genes
single-cell
transcriptomics
seurat
8 days ago by
firestar
★ 1.5k
0
votes
0
replies
116
views
Add HI:i:<n> tag to a BAM file
SAM
hisat2
STAR
tag
BAM
8 days ago by
predeus
★ 1.8k
0
votes
0
replies
119
views
Quality control of the X-chromosome for use in a GWAS using REGENIE
REGENIE
GWAS
LMM
chromosome-X
quality-control
8 days ago by
ucbtep
▴ 20
0
votes
0
replies
141
views
Dnaplotter
Artemis
8 days ago by
prs
• 0
2
votes
1
reply
217
views
How to create GO Bar Plot using data obtained from DAVID Functional Enrichment Analysis?
Plot
DAVID
R
updated 8 days ago by
Basti
★ 1.4k • written 8 days ago by
Stefanus C.B.
• 0
0
votes
2
replies
232
views
mrbayes segmentation fault
mrbayes
segmentation
fault
7 days ago by
dgrace999
• 0
0
votes
0
replies
135
views
Obtain the GenomicRanges from segmented CNA data and the corresponding TSS for EnrichedPlot
TSS
GRanges
EnrichedPlot
promoters
GenomicRanges
9 days ago by
melissachuaphd
• 0
0
votes
0
replies
123
views
ChIPseq w/ polyploid genome : Xenopus laevis
chipseq
alignment
xenopus
ploidy
9 days ago by
William
▴ 10
0
votes
0
replies
154
views
Differential (pathways) expression testing using linear model packages in R (Limma & GSVA)
GSVA
limma
R
9 days ago by
Tadeoye
▴ 30
0
votes
0
replies
131
views
How to quantify the expression of CD45 isoforms from bulk RNA-seq data
isoforms
Salmon
RNA-seq
CD45
9 days ago by
eager_underdog
• 0
0
votes
5
replies
342
views
How can I determine the number of detected genes and detected transcripts/isoforms in a BAM file + GTF file?
rnaseq
scRNA-seq
single-cell
genomics
ngs
updated 8 days ago by
GenoMax
127k • written 9 days ago by
O.rka
▴ 650
0
votes
2
replies
226
views
Processing fastqs generated by inDrop protocol
single-cell
rna-seq
indrop
updated 9 days ago by
Ram
38k • written 9 days ago by
bobbybobbobbo
• 0
1
vote
3
replies
282
views
How to extract/find the actual names of the gene_IDs if they are not fully presented in gtf.file, and link them to the Count.matrix
featureCounts
gtf
RNA-Seq
updated 9 days ago by
GenoMax
127k • written 9 days ago by
Pegasus
▴ 80
0
votes
1
reply
206
views
Circos plot
circos
updated 8 days ago by
Fabio Marroni
★ 3.0k • written 9 days ago by
prs
• 0
0
votes
1
reply
143
views
mpileup2sync
mpileup2sync
population2
updated 9 days ago by
Ram
38k • written 9 days ago by
Hayler Edu
▴ 30
0
votes
0
replies
95
views
Number of gigabases necesary for Iso-seq-PacBio
Iso-seq
RNA-Seq
Alternative-Splicing
PacBio
updated 9 days ago by
Ram
38k • written 9 days ago by
Jesús M
• 0
0
votes
2
replies
163
views
Problem with blasting UNMAPPED RNA-seq paired end reads in Jaculus jaculus
RNAseq
jaculus
unmapped
reads
9 days ago by
barbarainb
• 0
0
votes
0
replies
81
views
PGx question regarding RSIDs with more than one variant associated with it
pharmacogenomics
rsid
pgx
9 days ago by
Roy
▴ 10
0
votes
0
replies
120
views
Converting Abricate output (.tsv) to gff3 format
gff3
convert
tsv
Abricate
9 days ago by
ghataksnd
▴ 10
0
votes
0
replies
114
views
samtools mpileup - bases string explanation
samtools
mpileup
9 days ago by
igorm
▴ 20
0
votes
3
replies
258
views
Problem in converting SAM to BAM file by DROP SEQ
SAMtoBAM
updated 9 days ago by
Ram
38k • written 9 days ago by
VANSHIKA
• 0
0
votes
2
replies
236
views
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
vcf.gz
UnicodeDecodeError
ancIBD
9 days ago by
wangjincheng
• 0
0
votes
1
reply
215
views
Error while running Virusfinder
Virusfinder
updated 9 days ago by
Ram
38k • written 9 days ago by
DC
• 0
0
votes
0
replies
157
views
Fine mapping with GWAS
PAINTOR
GWAS
FINE-MAP
POST-GWAS
updated 9 days ago by
Nicolas Rosewick
10k • written 9 days ago by
Swati
• 0
1,000 results • Page
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Comment: GO enrichment analysis
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