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Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
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so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
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dsull
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OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
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> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
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sehriban.buyukkilic
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Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
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sehriban.buyukkilic
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Yeah, let me show you my featureCounts result, it looks like this. It's too low.
[1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
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samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
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Maria
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When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
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the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid
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Pierre Lindenbaum
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ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
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$ cat input.rs
rs11203366
rs11203367
rs874881
rs776453694
rs80324279
rs324420
rs112766203
wget -…
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Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
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You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM
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VITALA
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yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
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ahmad.sajad4541
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Thank you so much. Should i proceed for annotation step?
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