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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
10
votes
9
replies
2.0k
views
How to improve fastq quality based on fastqc output ?
RNA-Seq
5.9 years ago by
Angelique
▴ 10
10
votes
5
replies
5.6k
views
Intron Retention And Alternative 5'3' Splice Site Identification
updated 10.2 years ago by
Biostar
20 • written 13.0 years ago by
Arun
2.4k
10
votes
6
replies
2.8k
views
which language to use for such a bioinformatics web services infrastructure?
web-services
java
updated 13 months ago by
Ram
43k • written 8.9 years ago by
lait
▴ 180
10
votes
23
replies
2.4k
views
Two simillarly annotated sequence has no alignment similarity. Why?
blast
alignment
gene
updated 6.4 years ago by
GenoMax
141k • written 6.4 years ago by
Farbod
★ 3.4k
10
votes
12
replies
2.0k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
5.2 years ago by
msimmer92
▴ 300
10
votes
10
replies
2.0k
views
Minor allele frequency
GWAS
SNPs
Alleles
updated 5.4 years ago by
Biostar
20 • written 7.4 years ago by
alessandrotestori7
▴ 420
10
votes
5
replies
7.3k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 20 months ago by
Ram
43k • written 8.7 years ago by
seta
★ 1.9k
10
votes
19
replies
3.4k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.9 years ago by
GenoMax
141k • written 3.0 years ago by
matt
▴ 20
10
votes
7
replies
1.2k
views
Can two mates have different file size?
sequencing
fastq
5.7 years ago by
marongiu.luigi
▴ 710
10
votes
13
replies
5.8k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
7.2 years ago by
Vasu
▴ 770
10
votes
2
replies
2.8k
views
Standalone Blast Issue
blast
11.9 years ago by
chlazaris
• 0
10
votes
6
replies
8.3k
views
Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$modeFraction < 10)) { : missing value where TRUE/FALSE needed"?
fgsea
updated 2.8 years ago by
alserg
▴ 920 • written 2.8 years ago by
gabrielbaldanzi
▴ 10
9
votes
13
replies
3.4k
views
Python Script to map reads to reference sequence
sequence
python
mapping
script
reference sequence
5.0 years ago by
Fid_o
▴ 40
9
votes
5
replies
1.2k
views
how to retrieve all proteins related to cancer
proteins
7.9 years ago by
Learner
▴ 280
9
votes
7
replies
3.3k
views
Aligning Miseq With Deletions >10 Bases
alignment
miseq
next-gen
updated 10.8 years ago by
Biostar
20 • written 11.3 years ago by
Leszek
4.2k
9
votes
13
replies
1.6k
views
SNP's and Gene?
SNP
gene
4.5 years ago by
imgapgenomika
▴ 10
9
votes
10
replies
2.8k
views
About GATK4 Mutect2 runtime (Whole Exome seq)
GATK
Whole Exome Sequencing
Mutect2
3.3 years ago by
kwanghoon
▴ 20
9
votes
5
replies
3.9k
views
What's the interpretation behind Pathway enrichment analysis
networks
pathway enrichment analysis
gene
updated 6.6 years ago by
Biostar
20 • written 6.8 years ago by
Chaimaa
▴ 260
9
votes
16
replies
1.9k
views
feature extraction from SNPs in R
R
gene
sequence
SNP
5.5 years ago by
bioinfo456
▴ 150
9
votes
19
replies
2.3k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
4.3 years ago by
schlogl
▴ 160
9
votes
13
replies
2.4k
views
Reannotating a gene: Identifying translation and transcription start sites
RNA-Seq
genome
gene
7.3 years ago by
rh5118
▴ 40
9
votes
4
replies
5.5k
views
How to analyse normalized read count?
RNA-Seq
R
updated 15 months ago by
Ram
43k • written 8.9 years ago by
pbio
▴ 150
9
votes
10
replies
1.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 2.8 years ago by
i.sudbery
19k • written 2.8 years ago by
c_u
▴ 520
9
votes
11
replies
4.4k
views
please someone help me with running mirdeep2
software error
mirdeep2
perl
7.6 years ago by
zizigolu
★ 4.3k
9
votes
6
replies
1.3k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
9
votes
7
replies
1.1k
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 23 months ago by
Ram
43k • written 2.0 years ago by
2138493o
▴ 20
9
votes
12
replies
7.3k
views
How to align reads on reference using python?
genome
sequence
gene
sequencing
updated 5.4 years ago by
WouterDeCoster
47k • written 5.4 years ago by
doramora
▴ 10
9
votes
3
replies
7.2k
views
Statistical Distributions In Rna-Seq Data Analysis
statistics
rna
updated 5.1 years ago by
Biostar
20 • written 12.1 years ago by
Ngsnewbie
▴ 380
9
votes
11
replies
8.2k
views
8 follow
Extremely low mapping rates with bowtie2
alignment
next-gen
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
Sachin
▴ 10
9
votes
12
replies
1.5k
views
Copy number variations analysis
R
CNV
updated 4.4 years ago by
zx8754
11k • written 4.4 years ago by
rprog008
▴ 70
9
votes
9
replies
1.5k
views
Convert mouse amino acid location to genomic location
genome
gene
4.8 years ago by
L. A. Liggett
▴ 120
9
votes
7
replies
1.3k
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 15 months ago by
barslmn
★ 2.1k • written 16 months ago by
Batel
• 0
9
votes
7
replies
2.4k
views
Merging BWT indices for BWA
BWA
BWT
read aligner
merge
5.5 years ago by
rgc255
▴ 60
9
votes
7
replies
5.4k
views
How to combine a different sources of pathway database (KEGG, BioCarta) for Pathway analysis.
Pathway
enrichment analysis
GWAS
pathway analysis
7.8 years ago by
kmsh410
▴ 40
9
votes
13
replies
2.4k
views
single tumor vs multiple normal sample differential gene expression (RNA-Seq ) analysis using DESeq2
RNA-Seq
DESeq2
updated 3.0 years ago by
Ram
43k • written 3.0 years ago by
sumitguptabt
▴ 30
9
votes
4
replies
2.1k
views
[Code] Converte fasta/fa files to fastq
perl
fastq
sed
fasta
updated 20 months ago by
Ram
43k • written 8.4 years ago by
Shicheng Guo
★ 9.4k
9
votes
10
replies
2.2k
views
[solved] Convert fold changes of multiple transcripts of a given gene to a single value characterising this gene
RNA-Seq
7.6 years ago by
biostart
▴ 370
9
votes
7
replies
5.6k
views
fisher test with multiple samples
statistics
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
juncheng
▴ 220
9
votes
13
replies
15k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Shahzad
▴ 30
9
votes
14
replies
3.1k
views
vcf to xls wrong columns
vcf
7.7 years ago by
cristina_sabiers
▴ 110
9
votes
1
reply
6.1k
views
Why does MACS2 report multiple records for the same peak region?
ChIP-Seq
macs
macs2
updated 20 months ago by
Ram
43k • written 8.5 years ago by
James Ashmore
★ 3.4k
9
votes
10
replies
5.5k
views
6 follow
Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming
RNA-seq
updated 4.4 years ago by
nidhi.vijayan13
▴ 30 • written 5.7 years ago by
Lucila
▴ 20
9
votes
13
replies
2.0k
views
Archeological DNA sample - how to analyze
unmapped
paleogenomics
archeogenomics
Assembly
2.2 years ago by
Aruna
▴ 30
9
votes
11
replies
1.5k
views
6 follow
Split up excel cell into multiple records
excel
byonic
6.8 years ago by
rshipman
▴ 30
9
votes
10
replies
2.5k
views
why there is 0/0 genotyp in VCF file?
VCF
GATK
Variant
4.7 years ago by
star
▴ 350
9
votes
10
replies
3.4k
views
generation of heat map by excel data.
R
excel
heatmap
updated 5.8 years ago by
Ram
43k • written 5.9 years ago by
abhilashreddy495
▴ 10
9
votes
7
replies
2.7k
views
Averaging duplicates of a gene in RNA-Seq dataset
expression
differential
average
R
rna-seq
updated 2.8 years ago by
biomon
▴ 60 • written 2.8 years ago by
mohammedtoufiq91
▴ 250
9
votes
9
replies
4.7k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq
TSS
V-plot
4.4 years ago by
nanoide
▴ 120
9
votes
6
replies
1.9k
views
Question about featureCounts
RNA-Seq
featurecounts
updated 2.7 years ago by
wang-yanfang
• 0 • written 4.5 years ago by
chichaochen
▴ 30
9
votes
14
replies
4.3k
views
Explanation on Paired end single index for RNA seq
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
hothriananya
▴ 70
1,000 results • Page
3 of 20
Recent Votes
Comment: Why gatk VariantAnnotator required bam and coverage files
discoSnp - reference-free finding of isolated SNPs from non assembled reads
Comment: Figures are disappeared from html report of SnpEff
Answer: Figures are disappeared from html report of SnpEff
Comment: How to trim transcripts using information from NCBI contamination screen report
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
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Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
I am moving my answer to a comment. At this point you should email NCBI help desk and ask them this question. If you get an answer then ple…
Comment: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files
by
Pierre Lindenbaum
161k
> I would like to ask why they may require the bam file for this function? hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴ 30
By following above approach I got this ![enter image description here][1] [1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data
by
Kazo
• 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work?
by
Assa Yeroslaviz
★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error
by
Adrian Altenhoff
★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
by
dsull
★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
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