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Determining the correct reading frames for transcripts for dn/ds calculation
ka/ks dn/ds comparative genomics translation orf written 4 weeks ago by shreyasibiswas88 • 30
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148
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Best ORF to choose
orf codon rna-seq dna written 8 weeks ago by somitmittal • 0
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155
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Multiple ORF's of same length
dnaseq codon rna-seq orf written 8 weeks ago by somitmittal • 0
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225
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Is TransDecoder predicting the "true" set of protein-coding regions?
transdecoder rna-seq orf written 4 months ago by Santiago Montero-Mendieta • 70 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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211
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1
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ORF translation of a huge number of DNA sequences
orf sequence translation dna written 10 weeks ago by l.souza • 50 • updated 10 weeks ago by h.mon ♦ 8.0k
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113
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Functional information from de-novo orf calling in genome bins?
de-novo orf functional genomics properties written 11 weeks ago by O.rka • 30
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212
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Display Open Reading Frame on Clustal alignment
gene orf alignment written 6 months ago by andynkili • 10 • updated 4 months ago by Biostar ♦♦ 20
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228
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Upstream Primer and Restriction Sites
orf codon ecori primer pcr written 6 months ago by MolecularBiologyStudent • 20
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409
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How to identify ORFs in Python dictionaries
open reading frame python3 python dictionaries orf written 6 months ago by ron • 20
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405
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ORF finder script
open reading frame orf bash shell sequencing written 7 months ago by ahm3dhany • 10
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1
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295
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1
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Finding a downstream ORF
entrez direct orf genome written 8 months ago by andrey.v.shubin • 40 • updated 8 months ago by EVR • 430
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1
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353
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1
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ORFs from blastx results
orf coding sequence blastx rna-seq written 8 months ago by giulia.zancolli • 0 • updated 8 months ago by abascalfederico • 970
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1
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315
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1
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How to use multifasta file in EMBOSS plotORF ?
software error orf sequence emboss written 9 months ago by Farbod • 3.0k • updated 9 months ago by Sej Modha • 1.7k
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418
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Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
gene orf alignment blast cds written 9 months ago by Farbod • 3.0k
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476
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1
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Python script to find ORFs not returning expected results for final frame
python sequence orf written 14 months ago by njmcdonald • 40 • updated 14 months ago by Markus • 200
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423
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EMBOSS getORF not keeping trinity identifiers
assembly protein rna-seq orf written 16 months ago by onspotproductions • 120
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480
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Perl Help to find orf
perl bioinformatics orf written 16 months ago by ksi216 • 40
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2
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706
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2
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Trinity assembly and ORF decoder issue
decoder trinity rna-seq orf written 18 months ago by onspotproductions • 120
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639
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1
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Finding ORF from denovo transcriptome assembly .fasta file?
orf rna-seq transcriptome written 20 months ago by Amk • 120 • updated 20 months ago by 5heikki ♦ 6.5k
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2.7k
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1
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Find Multiple Orf In Batch
orf written 3.4 years ago by mgarnier • 0 • updated 21 months ago by Biostar ♦♦ 20
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2
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952
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which one is better to do, blastx or blastp?
orf alignment rna-seq blast written 21 months ago by seta • 920 • updated 21 months ago by Antonio R. Franco • 3.4k
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Compairing A 454 Assemblage With A Gene Expression Analysis In Python
gene python orf fasta written 6.5 years ago by Nico • 30 • updated 21 months ago by Biostar ♦♦ 20
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3
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1.2k
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3
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-1 exon frame in UCSC gene table
gene genome ucsc orf retrieval written 22 months ago by Mateusz • 70 • updated 22 months ago by cpad0112 • 1.7k
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1
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585
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1
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Detecting random distribution of reads in ORF from the assembled transcripts
random distribution assembly evaluation orf written 23 months ago by seta • 920 • updated 23 months ago by Michael Dondrup ♦ 42k
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507
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find NON Coding SNPs using annovar or ucsc genome browser
orf non coding annovar snp ucsc written 2.3 years ago by pinikoma • 0
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How To Identify Genes In Transposable Elements
orf genes written 4.1 years ago by Biomonika (Noolean) ♦ 2.9k • updated 2.4 years ago by Biostar ♦♦ 20
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4.7k
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Python- Find ORF in sequence, compound return statement
python codon sequence orf written 2.8 years ago by st.ph.n • 1.2k • updated 2.8 years ago by Devon Ryan ♦ 70k
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9 follow
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How to extract the longest orf?
orf getorf written 3.1 years ago by MAPK • 990 • updated 3.1 years ago by SES ♦ 7.9k
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1.7k
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1
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Perl Script To Retrieve All Orf?
perl orf written 3.4 years ago by Adrian Pelin • 2.0k • updated 3.4 years ago by Rahul Sharma • 520
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Annotate Orfs?
orf written 3.7 years ago by Adrian Pelin • 2.0k
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